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NM_000335.5(SCN5A):c.856G>T (p.Ala286Ser) AND not provided

Germline classification:
Benign/Likely benign (5 submissions)
Last evaluated:
Feb 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000058852.20

Allele description [Variation Report for NM_000335.5(SCN5A):c.856G>T (p.Ala286Ser)]

NM_000335.5(SCN5A):c.856G>T (p.Ala286Ser)

Gene:
SCN5A:sodium voltage-gated channel alpha subunit 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p22.2
Genomic location:
Preferred name:
NM_000335.5(SCN5A):c.856G>T (p.Ala286Ser)
Other names:
p.A286S:GCG>TCG
HGVS:
  • NC_000003.12:g.38609812C>A
  • NG_008934.1:g.44861G>T
  • NM_000335.5:c.856G>TMANE SELECT
  • NM_001099404.1:c.856G>T
  • NM_001099404.2:c.856G>T
  • NM_001099405.2:c.856G>T
  • NM_001160160.2:c.856G>T
  • NM_001160161.2:c.856G>T
  • NM_001354701.2:c.856G>T
  • NM_198056.3:c.856G>T
  • NP_000326.2:p.Ala286Ser
  • NP_001092874.1:p.Ala286Ser
  • NP_001092875.1:p.Ala286Ser
  • NP_001153632.1:p.Ala286Ser
  • NP_001153633.1:p.Ala286Ser
  • NP_001341630.1:p.Ala286Ser
  • NP_932173.1:p.Ala286Ser
  • NP_932173.1:p.Ala286Ser
  • LRG_289t1:c.856G>T
  • LRG_289t3:c.856G>T
  • LRG_289:g.44861G>T
  • LRG_289p1:p.Ala286Ser
  • NC_000003.11:g.38651303C>A
  • NM_198056.2:c.856G>T
  • Q14524:p.Ala286Ser
Protein change:
A286S
Links:
UniProtKB: Q14524#VAR_074339; dbSNP: rs61746118
NCBI 1000 Genomes Browser:
rs61746118
Molecular consequence:
  • NM_000335.5:c.856G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001099404.2:c.856G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001099405.2:c.856G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001160160.2:c.856G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001160161.2:c.856G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354701.2:c.856G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198056.3:c.856G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000090372Cardiovascular Biomedical Research Unit, Royal Brompton & Harefield NHS Foundation Trust
no classification provided
not providedgermlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

SCV000291836Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely benign
(Feb 1, 2024)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001145508Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics Criteria)
Benign
(Sep 18, 2018)
germlineclinical testing

PubMed (6)
[See all records that cite these PMIDs]

SCV001931085Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV001971253Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing, literature only

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

An international compendium of mutations in the SCN5A-encoded cardiac sodium channel in patients referred for Brugada syndrome genetic testing.

Kapplinger JD, Tester DJ, Alders M, Benito B, Berthet M, Brugada J, Brugada P, Fressart V, Guerchicoff A, Harris-Kerr C, Kamakura S, Kyndt F, Koopmann TT, Miyamoto Y, Pfeiffer R, Pollevick GD, Probst V, Zumhagen S, Vatta M, Towbin JA, Shimizu W, Schulze-Bahr E, et al.

Heart Rhythm. 2010 Jan;7(1):33-46. doi: 10.1016/j.hrthm.2009.09.069. Epub 2009 Oct 8.

PubMed [citation]
PMID:
20129283
PMCID:
PMC2822446
See all PubMed Citations (7)

Details of each submission

From Cardiovascular Biomedical Research Unit, Royal Brompton & Harefield NHS Foundation Trust, SCV000090372.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

This variant has been reported in the following publications (PMID:19841300;PMID:20129283).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Invitae, SCV000291836.9

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Athena Diagnostics, SCV001145508.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (6)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV001931085.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001971253.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 16, 2024