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NM_005138.3(SCO2):c.341G>A (p.Arg114His) AND Myopia 6

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 2, 2013
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000043620.3

Allele description [Variation Report for NM_005138.3(SCO2):c.341G>A (p.Arg114His)]

NM_005138.3(SCO2):c.341G>A (p.Arg114His)

Genes:
NCAPH2:non-SMC condensin II complex subunit H2 [Gene - OMIM - HGNC]
SCO2:synthesis of cytochrome C oxidase 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q13.33
Genomic location:
Preferred name:
NM_005138.3(SCO2):c.341G>A (p.Arg114His)
HGVS:
  • NC_000022.11:g.50524071C>T
  • NG_011860.1:g.11015G>A
  • NG_016235.1:g.7369G>A
  • NG_021419.1:g.20856C>T
  • NM_001169109.2:c.341G>A
  • NM_001169110.1:c.341G>A
  • NM_001169111.2:c.341G>A
  • NM_001185011.2:c.*696C>T
  • NM_005138.3:c.341G>AMANE SELECT
  • NM_152299.4:c.*696C>TMANE SELECT
  • NP_001162580.1:p.Arg114His
  • NP_001162581.1:p.Arg114His
  • NP_001162582.1:p.Arg114His
  • NP_005129.2:p.Arg114His
  • NP_005129.2:p.Arg114His
  • LRG_727:g.11015G>A
  • NC_000022.10:g.50962500C>T
  • NM_005138.2:c.341G>A
  • O43819:p.Arg114His
Protein change:
R114H; ARG114HIS
Links:
UniProtKB: O43819#VAR_070053; OMIM: 604272.0009; dbSNP: rs145100473
NCBI 1000 Genomes Browser:
rs145100473
Molecular consequence:
  • NM_001185011.2:c.*696C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_152299.4:c.*696C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001169109.2:c.341G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001169110.1:c.341G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001169111.2:c.341G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005138.3:c.341G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Myopia 6 (MYP6)
Synonyms:
Myopia, susceptibility to
Identifiers:
MONDO: MONDO:0012154; MedGen: C1837148; OMIM: 608908

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000071645OMIM
no assertion criteria provided
Pathogenic
(May 2, 2013)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Mutations in SCO2 are associated with autosomal-dominant high-grade myopia.

Tran-Viet KN, Powell C, Barathi VA, Klemm T, Maurer-Stroh S, Limviphuvadh V, Soler V, Ho C, Yanovitch T, Schneider G, Li YJ, Nading E, Metlapally R, Saw SM, Goh L, Rozen S, Young TL.

Am J Hum Genet. 2013 May 2;92(5):820-6. doi: 10.1016/j.ajhg.2013.04.005.

PubMed [citation]
PMID:
23643385
PMCID:
PMC3644634

Details of each submission

From OMIM, SCV000071645.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In an individual of Middle Eastern descent with high-grade myopia (MYP6; 608908), Tran-Viet et al. (2013) identified heterozygosity for a 341G-A transition in exon 2 of the SCO2 gene, resulting in an arg114-to-his (R114H) substitution at a conserved residue in the functional catalytic domain. The mutation was not found in 1,000 control DNA samples.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024