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NM_000419.5(ITGA2B):c.3077G>A (p.Arg1026Gln) AND Platelet-type bleeding disorder 16

Germline classification:
Likely pathogenic (2 submissions)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000043485.7

Allele description [Variation Report for NM_000419.5(ITGA2B):c.3077G>A (p.Arg1026Gln)]

NM_000419.5(ITGA2B):c.3077G>A (p.Arg1026Gln)

Gene:
ITGA2B:integrin subunit alpha 2b [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q21.31
Genomic location:
Preferred name:
NM_000419.5(ITGA2B):c.3077G>A (p.Arg1026Gln)
Other names:
R995Q
HGVS:
  • NC_000017.11:g.44372407C>T
  • NG_008331.1:g.22099G>A
  • NM_000419.5:c.3077G>AMANE SELECT
  • NP_000410.2:p.Arg1026Gln
  • LRG_479t1:c.3077G>A
  • LRG_479:g.22099G>A
  • NC_000017.10:g.42449775C>T
  • NM_000419.3:c.3077G>A
  • NM_000419.4:c.3077G>A
  • NM_000419.5(ITGA2B):c.3077G>AMANE SELECT
  • P08514:p.Arg1026Gln
Protein change:
R1026Q; ARG995GLN
Links:
UniProtKB: P08514#VAR_030468; OMIM: 607759.0017; dbSNP: rs879255514
NCBI 1000 Genomes Browser:
rs879255514
Molecular consequence:
  • NM_000419.5:c.3077G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Platelet-type bleeding disorder 16 (BDPLT16)
Synonyms:
Bleeding disorder, platelet-type, 16, autosomal dominant
Identifiers:
MONDO: MONDO:0008552; MedGen: C5442010; Orphanet: 140957; OMIM: 187800

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000067297OMIM
no assertion criteria provided
Pathogenic
(Sep 1, 2011)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

SCV004013100ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenicgermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A defect of platelet aggregation associated with an abnormal distribution of glycoprotein IIb-IIIa complexes within the platelet: the cause of a lifelong bleeding disorder.

Hardisty R, Pidard D, Cox A, Nokes T, Legrand C, Bouillot C, Pannocchia A, Heilmann E, Hourdillé P, Bellucci S, et al.

Blood. 1992 Aug 1;80(3):696-708.

PubMed [citation]
PMID:
1638023

R to Q amino acid substitution in the GFFKR sequence of the cytoplasmic domain of the integrin IIb subunit in a patient with a Glanzmann's thrombasthenia-like syndrome.

Peyruchaud O, Nurden AT, Milet S, Macchi L, Pannochia A, Bray PF, Kieffer N, Bourre F.

Blood. 1998 Dec 1;92(11):4178-87.

PubMed [citation]
PMID:
9834222
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000067297.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In an Italian father and son with autosomal dominant platelet-type bleeding disorder-16 and macrothrombocytopenia (BDPLT16; 187800), originally reported by Hardisty et al. (1992), Peyruchaud et al. (1998) identified a heterozygous c.3078G-A transition in the ITGA2B gene, resulting in an arg995-to-gln (R995Q) substitution at a highly conserved GFFKR sequence in the cytoplasmic domain. Expression of the mutation in CHO cells resulted in low surface expression of the mutant protein (about 50%), suggesting that the patient had another pathogenic mutation causing his severe reduction of ITGA2B expression (12-20% of normal). CHO cells transfected with the R995Q mutation showed little or no binding to PAC-1, an antibody that specifically recognizes the activated form of the GPIIb/IIIa complex, suggesting that the mutant complex was not in a high-affinity state. However, incubation with an activating antibody increased PAC-1 binding compared to wildtype, suggesting that the mutant integrin complex is more easily activatable. Peyruchaud et al. (1998) noted that a salt bridge between R995 and residue D723 in the ITGB3 gene (173470) participates in the regulation of the activation state of the complex, and suggested that the R995Q mutation would give rise to a receptor that is not locked in a high activation state, but is more easily activatable compared to wildtype. Nurden et al. (2011) found that the patient reported by Hardisty et al. (1992) and Peyruchaud et al. (1998) also carried a splice site deletion in the ITGA2B gene resulting in lack of protein expression that was inherited from his mother, who had decreased expression of ITGA2B but no platelet abnormalities. This second mutation explained the severe lack of GPIIb/IIIa on the patient's platelets.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology, SCV004013100.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Jun 23, 2024