NM_206933.4(USH2A):c.10922G>A (p.Arg3641Lys) AND not specified

Germline classification:: Likely benign (1 submission)
Last evaluated:: Jul 26, 2012
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000041683.5

Allele description [Variation Report for NM_206933.4(USH2A):c.10922G>A (p.Arg3641Lys)]

NM_206933.4(USH2A):c.10922G>A (p.Arg3641Lys)

Gene:

USH2A:usherin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1q41

Genomic location:

Preferred name:

NM_206933.4(USH2A):c.10922G>A (p.Arg3641Lys)

HGVS:

NC_000001.11:g.215779860C>T
NG_009497.2:g.648589G>A
NM_206933.4:c.10922G>AMANE SELECT
NP_996816.3:p.Arg3641Lys
NC_000001.10:g.215953202C>T
NG_009497.1:g.648537G>A
NM_206933.2:c.10922G>A
c.10922G>A

Protein change:

R3641K

Links:

dbSNP: rs397517969

NCBI 1000 Genomes Browser:

rs397517969

Molecular consequence:

NM_206933.4:c.10922G>A - missense variant - [Sequence Ontology: SO:0001583]

Observations:

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000065379	Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine	criteria provided, single submitter (LMM Criteria)	Likely benign (Jul 26, 2012)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000065379

Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine

criteria provided, single submitter

(LMM Criteria)

Likely benign
(Jul 26, 2012)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	not provided	1	1	not provided	not provided	not provided	clinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]

PMID:: 24033266
PMCID:: PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000065379.6

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (1)

Description

Arg3641Lys in Exon 55 of USH2A: This variant is not expected to have clinical si gnificance because all computational analyses (biochemical amino acid properties , conservation, AlignGVGD, PolyPhen2, and SIFT) predict no impact to the protein , including the fact that opossum has a lysine (Lys) at this position despite hi gh nearby amino acid conservation.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	not provided	not provided	not provided	not provided		1	not provided	1	not provided

Last Updated: Sep 29, 2024

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