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NM_022124.6(CDH23):c.460G>A (p.Val154Met) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 27, 2010
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000039185.5

Allele description [Variation Report for NM_022124.6(CDH23):c.460G>A (p.Val154Met)]

NM_022124.6(CDH23):c.460G>A (p.Val154Met)

Gene:
CDH23:cadherin related 23 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q22.1
Genomic location:
Preferred name:
NM_022124.6(CDH23):c.460G>A (p.Val154Met)
HGVS:
  • NC_000010.11:g.71566772G>A
  • NG_008835.1:g.174826G>A
  • NM_001171930.2:c.460G>A
  • NM_001171931.2:c.460G>A
  • NM_001171932.2:c.460G>A
  • NM_022124.6:c.460G>AMANE SELECT
  • NM_052836.4:c.460G>A
  • NP_001165401.1:p.Val154Met
  • NP_001165402.1:p.Val154Met
  • NP_001165403.1:p.Val154Met
  • NP_071407.4:p.Val154Met
  • NP_443068.1:p.Val154Met
  • NC_000010.10:g.73326529G>A
  • NM_022124.5:c.460G>A
  • c.460G>A
Protein change:
V154M
Links:
dbSNP: rs199741966
NCBI 1000 Genomes Browser:
rs199741966
Molecular consequence:
  • NM_001171930.2:c.460G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001171931.2:c.460G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001171932.2:c.460G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_022124.6:c.460G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_052836.4:c.460G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000062869Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)		Uncertain significance
(Jul 27, 2010) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided11not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000062869.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

Variant classified as Uncertain Significance - Favor Benign. The Val154Met varia nt has not been reported in the literature nor previously identified by our labo ratory. This residue is conserved across species; however, computational analyse s (PolyPhen, SIFT, AlignGVGD) provide inconsistent predictions regarding the imp act to the protein and this information is not very predictive of pathogenicity anyway. In summary, the clinical significance of this variant cannot be determin ed with certainty at this time.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not provided1not provided

Last Updated: May 1, 2024