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NM_002230.4(JUP):c.1711G>T (p.Ala571Ser) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 1, 2012
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000039068.5

Allele description [Variation Report for NM_002230.4(JUP):c.1711G>T (p.Ala571Ser)]

NM_002230.4(JUP):c.1711G>T (p.Ala571Ser)

Gene:
JUP:junction plakoglobin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q21.2
Genomic location:
Preferred name:
NM_002230.4(JUP):c.1711G>T (p.Ala571Ser)
HGVS:
  • NC_000017.11:g.41758461C>A
  • NG_009090.2:g.33252G>T
  • NM_001352773.2:c.1711G>T
  • NM_001352774.2:c.1711G>T
  • NM_001352775.2:c.1711G>T
  • NM_001352776.2:c.1711G>T
  • NM_001352777.2:c.1711G>T
  • NM_002230.4:c.1711G>TMANE SELECT
  • NM_021991.4:c.1711G>T
  • NP_001339702.1:p.Ala571Ser
  • NP_001339703.1:p.Ala571Ser
  • NP_001339704.1:p.Ala571Ser
  • NP_001339705.1:p.Ala571Ser
  • NP_001339706.1:p.Ala571Ser
  • NP_002221.1:p.Ala571Ser
  • NP_068831.1:p.Ala571Ser
  • LRG_401t1:c.1711G>T
  • LRG_401t2:c.1711G>T
  • LRG_401:g.33252G>T
  • NC_000017.10:g.39914713C>A
  • NM_002230.2:c.1711G>T
  • NM_021991.2:c.1711G>T
  • c.1711G>T
Protein change:
A571S
Links:
dbSNP: rs397517297
NCBI 1000 Genomes Browser:
rs397517297
Molecular consequence:
  • NM_001352773.2:c.1711G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352774.2:c.1711G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352775.2:c.1711G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352776.2:c.1711G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352777.2:c.1711G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002230.4:c.1711G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_021991.4:c.1711G>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000062746Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Uncertain significance
(Mar 1, 2012)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided11not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000062746.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

The Ala571Ser variant (JUP) has not been previously reported in the literature o r been previously identified by our laboratory. Computational analyses (biochem ical amino acid properties, conservation, AlignGVGD, PolyPhen2, and SIFT) sugges t that this variant may not impact the normal function of the protein, though th is information is not predictive enough to rule out pathogenicity. Additional s tudies are needed to fully assess the clinical significance of the Ala571Ser var iant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not provided1not provided

Last Updated: Sep 29, 2024