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NM_004004.6(GJB2):c.380G>A (p.Arg127His) AND not specified

Germline classification:
Benign/Likely benign (6 submissions)
Last evaluated:
Aug 27, 2020
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000037847.36

Allele description [Variation Report for NM_004004.6(GJB2):c.380G>A (p.Arg127His)]

NM_004004.6(GJB2):c.380G>A (p.Arg127His)

Gene:
GJB2:gap junction protein beta 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q12.11
Genomic location:
Preferred name:
NM_004004.6(GJB2):c.380G>A (p.Arg127His)
HGVS:
  • NC_000013.11:g.20189202C>T
  • NG_008358.1:g.8774G>A
  • NM_004004.6:c.380G>AMANE SELECT
  • NP_003995.2:p.Arg127His
  • NP_003995.2:p.Arg127His
  • LRG_1350t1:c.380G>A
  • LRG_1350:g.8774G>A
  • LRG_1350p1:p.Arg127His
  • NC_000013.10:g.20763341C>T
  • NM_004004.5:c.380G>A
  • P29033:p.Arg127His
  • c.380G>A
Protein change:
R127H
Links:
UniProtKB: P29033#VAR_015939; dbSNP: rs111033196
NCBI 1000 Genomes Browser:
rs111033196
Molecular consequence:
  • NM_004004.6:c.380G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
34

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000061509Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Benign
(Apr 24, 2013)
germlineclinical testing

PubMed (13)
[See all records that cite these PMIDs]

SCV000112273Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Benign
(Dec 18, 2012)
germlineclinical testing

Citation Link,

SCV000309916PreventionGenetics, part of Exact Sciences
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely benigngermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001476378Athena Diagnostics
criteria provided, single submitter

(Athena Diagnostics criteria)
Benign
(Aug 27, 2020)
unknownclinical testing

PubMed (50)
[See all records that cite these PMIDs]

SCV001807908Genome Diagnostics Laboratory, Amsterdam University Medical Center - VKGL Data-share Consensus
no assertion criteria provided
Benigngermlineclinical testing

SCV001966867Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown6not providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlinenot provided3434not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753
See all PubMed Citations (52)

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000061509.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided34not providednot providedclinical testing PubMed (13)

Description

This variant is not expected to have clinical significance. Although there is so me controversy in the literature over the significance of this variant, after a thorough review of the following papers (Estivill et al. 1998; Marlin et al. 200 1; D'Andrea et al. 2002; Thonnissen et al. 2002; RamShankar et al, 2003; Wang et al. 2003; Toth et al, 2004; Chaleshtori et al. 2006; Dahl et al, 2006; Palmada et al, 2006) we conclude that the Arg127His variant is not causative for hearing loss. This conclusion is mainly due to its common (17.5%) occurrence in an Asia n Indian control population (RamShankar et al, 2003) and homozygous and compound heterozygous identification in individuals with normal hearing (Marlin et al. 2 001; RamShankar et al, 2003; Dahl et al, 2006). In addition, it has been reporte d in two large population studies; the Arg127His variant has been identified in has been identified in 0.3% (26/8600) of European American chromosomes by the NH LBI Exome Sequencing Project and 0.23% (5/2178) chromosomes by the 1000 Genomes Project (http://evs.gs.washington.edu/EVS/; dbSNP rs111033196). In summary, this variant is meets our criteria to be classified as benign due to its high freque ncy in the general population and its presence in the homozygous state in unaffe cted individuals.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided34not provided34not provided

From Eurofins Ntd Llc (ga), SCV000112273.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided6not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided6not providednot providednot provided

From PreventionGenetics, part of Exact Sciences, SCV000309916.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Athena Diagnostics, SCV001476378.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (50)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Genome Diagnostics Laboratory, Amsterdam University Medical Center - VKGL Data-share Consensus, SCV001807908.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001966867.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024