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NM_002667.5(PLN):c.*4T>A AND not specified

Germline classification:
Likely benign (1 submission)
Last evaluated:
Feb 15, 2012
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000037578.5

Allele description [Variation Report for NM_002667.5(PLN):c.*4T>A]

NM_002667.5(PLN):c.*4T>A

Genes:
CEP85L:centrosomal protein 85 like [Gene - OMIM - HGNC]
PLN:phospholamban [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6q22.31
Genomic location:
Preferred name:
NM_002667.5(PLN):c.*4T>A
Other names:
c.*4T>A
HGVS:
  • NC_000006.12:g.118559084T>A
  • NG_009082.1:g.15806T>A
  • NG_021248.1:g.155992A>T
  • NM_001042475.3:c.1020+6445A>TMANE SELECT
  • NM_001178035.2:c.1029+6445A>T
  • NM_002667.5:c.*4T>AMANE SELECT
  • NM_206921.3:c.1020+6445A>T
  • LRG_390t1:c.*4T>A
  • LRG_390:g.15806T>A
  • NC_000006.11:g.118880247T>A
  • NM_002667.3:c.*4T>A
Links:
dbSNP: rs397516782
NCBI 1000 Genomes Browser:
rs397516782
Molecular consequence:
  • NM_002667.5:c.*4T>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001042475.3:c.1020+6445A>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001178035.2:c.1029+6445A>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_206921.3:c.1020+6445A>T - intron variant - [Sequence Ontology: SO:0001627]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000061236Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Likely benign
(Feb 15, 2012)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided21not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000061236.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testing PubMed (1)

Description

*4T>A in exon 2 of PLN: This variant is not expected to have clinical significa nce because it is located in the 3' UTR.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided2not provided1not provided

Last Updated: Sep 1, 2024