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NM_000169.3(GLA):c.129C>T (p.Gly43=) AND not specified

Germline classification:
Benign/Likely benign (4 submissions)
Last evaluated:
Dec 12, 2016
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000035302.14

Allele description [Variation Report for NM_000169.3(GLA):c.129C>T (p.Gly43=)]

NM_000169.3(GLA):c.129C>T (p.Gly43=)

Genes:
RPL36A-HNRNPH2:RPL36A-HNRNPH2 readthrough [Gene - HGNC]
GLA:galactosidase alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq22.1
Genomic location:
Preferred name:
NM_000169.3(GLA):c.129C>T (p.Gly43=)
HGVS:
  • NC_000023.11:g.101407775G>A
  • NG_007119.1:g.5189C>T
  • NG_016327.1:g.4573G>A
  • NM_000169.3:c.129C>TMANE SELECT
  • NM_001199973.2:c.301-4161G>A
  • NM_001199974.2:c.178-4161G>A
  • NM_001406747.1:c.129C>T
  • NM_001406748.1:c.129C>T
  • NM_001406749.1:c.129C>T
  • NP_000160.1:p.Gly43=
  • NP_000160.1:p.Gly43=
  • NP_001393676.1:p.Gly43=
  • NP_001393677.1:p.Gly43=
  • NP_001393678.1:p.Gly43=
  • LRG_672t1:c.129C>T
  • LRG_672:g.5189C>T
  • LRG_672p1:p.Gly43=
  • NC_000023.10:g.100662763G>A
  • NM_000169.2:c.129C>T
  • NR_164783.1:n.151C>T
  • NR_176252.1:n.151C>T
  • NR_176253.1:n.151C>T
  • c.129C>T
  • p.G43G
  • p.Gly43Gly
Links:
dbSNP: rs146177035
NCBI 1000 Genomes Browser:
rs146177035
Molecular consequence:
  • NM_001199973.2:c.301-4161G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001199974.2:c.178-4161G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NR_164783.1:n.151C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176252.1:n.151C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176253.1:n.151C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_000169.3:c.129C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406747.1:c.129C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406748.1:c.129C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406749.1:c.129C>T - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000058950Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Likely benign
(Dec 12, 2016)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV000334664Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL Classification Definitions 2015)
Benign
(Aug 28, 2015)
germlineclinical testing

Citation Link,

SCV001918831Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Benigngermlineclinical testing

SCV001929707Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknown1not providednot providednot providednot providedclinical testing
not providedgermlinenot provided11not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000058950.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)

Description

proposed classification - variant undergoing re-assessment, contact laboratory

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided1not provided1not provided

From Eurofins Ntd Llc (ga), SCV000334664.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus, SCV001918831.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV001929707.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024