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NM_006950.3(SYN1):c.1663C>T (p.Gln555Ter) AND Epilepsy, X-linked 1, with variable learning disabilities and behavior disorders

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 1, 2013
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000034815.7

Allele description [Variation Report for NM_006950.3(SYN1):c.1663C>T (p.Gln555Ter)]

NM_006950.3(SYN1):c.1663C>T (p.Gln555Ter)

Gene:
SYN1:synapsin I [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xp11.3
Genomic location:
Preferred name:
NM_006950.3(SYN1):c.1663C>T (p.Gln555Ter)
HGVS:
  • NC_000023.11:g.47574321G>A
  • NG_008437.1:g.50537C>T
  • NM_006950.3:c.1663C>TMANE SELECT
  • NM_133499.2:c.1663C>T
  • NP_008881.2:p.Gln555Ter
  • NP_598006.1:p.Gln555Ter
  • NC_000023.10:g.47433720G>A
Protein change:
Q555*; GLN555TER
Links:
OMIM: 313440.0002; dbSNP: rs397514679
NCBI 1000 Genomes Browser:
rs397514679
Molecular consequence:
  • NM_006950.3:c.1663C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_133499.2:c.1663C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Epilepsy, X-linked 1, with variable learning disabilities and behavior disorders
Synonyms:
Epilepsy, X-linked, with variable learning disabilities and behavior disorders; X-linked epilepsy-learning disabilities-behavior disorders syndrome
Identifiers:
MONDO: MONDO:0010339; MedGen: C5774177; Orphanet: 85294; OMIM: 300491

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000058377OMIM
no assertion criteria provided
Pathogenic
(Jun 1, 2013)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

SYN1 loss-of-function mutations in autism and partial epilepsy cause impaired synaptic function.

Fassio A, Patry L, Congia S, Onofri F, Piton A, Gauthier J, Pozzi D, Messa M, Defranchi E, Fadda M, Corradi A, Baldelli P, Lapointe L, St-Onge J, Meloche C, Mottron L, Valtorta F, Khoa Nguyen D, Rouleau GA, Benfenati F, Cossette P.

Hum Mol Genet. 2011 Jun 15;20(12):2297-307. doi: 10.1093/hmg/ddr122. Epub 2011 Mar 25.

PubMed [citation]
PMID:
21441247

Epileptogenic Q555X SYN1 mutant triggers imbalances in release dynamics and short-term plasticity.

Lignani G, Raimondi A, Ferrea E, Rocchi A, Paonessa F, Cesca F, Orlando M, Tkatch T, Valtorta F, Cossette P, Baldelli P, Benfenati F.

Hum Mol Genet. 2013 Jun 1;22(11):2186-99. doi: 10.1093/hmg/ddt071. Epub 2013 Feb 12.

PubMed [citation]
PMID:
23406870
PMCID:
PMC3652419

Details of each submission

From OMIM, SCV000058377.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In 6 male members of a large French Canadian family with X-linked epilepsy and/or autism spectrum disorders (EPILX1; 300491), Fassio et al. (2011) identified a hemizygous gln555-to-ter (Q555X) substitution in exon 12 of the SYN1 gene. The mutation, which was found by linkage analysis followed by candidate gene sequencing, was not found in 418 control chromosomes. In vitro functional expression assays showed that the mutation virtually abolished the DE-domain binding to synaptic vesicles. The mutation also abolished or dramatically reduced phosphorylation of the protein and abolished binding to the SH3 domains of interacting proteins. Expression of the mutant protein in Syn1-null hippocampal cells caused impaired axonal elongation and impaired synaptic trafficking by decreasing release of synaptic vesicles, particularly from the readily releasable pool. These findings were consistent with a complete loss of function.

Using lentivirus-infected mouse hippocampal neurons, Lignani et al. (2013) found that the human Q555X mutation interfered with the ability of SYN1 to interact with mouse Syn2 (600755) isoforms and altered the subcellular distribution of SYN1 compared with wildtype SYN1. The Q555X mutation impaired synchronous coupling of synaptic vesicles to vesicle release machinery, reduced the probability of vesicle release in excitatory synapses, and decreased the pool of readily releasable vesicles in inhibitory synapses. The net effect was an excitatory/inhibitory imbalance with network hyperexcitability.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 19, 2024