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NM_006888.6(CALM1):c.293A>G (p.Asn98Ser) AND Catecholaminergic polymorphic ventricular tachycardia 4

Germline classification:
Likely pathogenic (4 submissions)
Last evaluated:
Jul 13, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000032977.42

Allele description [Variation Report for NM_006888.6(CALM1):c.293A>G (p.Asn98Ser)]

NM_006888.6(CALM1):c.293A>G (p.Asn98Ser)

Gene:
CALM1:calmodulin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q32.11
Genomic location:
Preferred name:
NM_006888.6(CALM1):c.293A>G (p.Asn98Ser)
Other names:
N97S
HGVS:
  • NC_000014.9:g.90404386A>G
  • NG_013338.1:g.12404A>G
  • NM_001363669.2:c.185A>G
  • NM_001363670.2:c.296A>G
  • NM_006888.6:c.293A>GMANE SELECT
  • NP_001350598.1:p.Asn62Ser
  • NP_001350599.1:p.Asn99Ser
  • NP_008819.1:p.Asn98Ser
  • NC_000014.8:g.90870730A>G
  • NM_006888.4:c.293A>G
  • NM_006888.5:c.293A>G
  • NP_008819.1:p.Asn98Ser(Asn97Ser)
  • P62158:p.Asn98Ser
Note:
NCBI staff reviewed the sequence information reported in PubMed 23040497 to determine the location of this allele on the current reference sequence. Their numbering of Asn97Ser, when begun at Met1, will be Asn98Ser.
Protein change:
N62S; ASN97SER
Links:
UniProtKB: P62158#VAR_069223; OMIM: 114180.0002; dbSNP: rs267607277
NCBI 1000 Genomes Browser:
rs267607277
Molecular consequence:
  • NM_001363669.2:c.185A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363670.2:c.296A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_006888.6:c.293A>G - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Catecholaminergic polymorphic ventricular tachycardia 4
Identifiers:
MONDO: MONDO:0013966; MedGen: C3554047; Orphanet: 3286; OMIM: 614916

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000056752OMIM
no assertion criteria provided
Pathogenic
(Oct 5, 2012)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

SCV000147940GeneReviews
no classification provided
not providedgermlineliterature only

SCV000187714Nyegaard lab; Aarhus University
no assertion criteria provided
Pathogenic
(Jul 23, 2012)
de novoresearch

PubMed (1)
[See all records that cite this PMID]

SCV000299265Center for Medical Genetics Ghent, University of Ghent
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Jul 13, 2016)
de novoclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyes11not providednot providednoclinical testing, research
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineyesnot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Divergent regulation of ryanodine receptor 2 calcium release channels by arrhythmogenic human calmodulin missense mutants.

Hwang HS, Nitu FR, Yang Y, Walweel K, Pereira L, Johnson CN, Faggioni M, Chazin WJ, Laver D, George AL Jr, Cornea RL, Bers DM, Knollmann BC.

Circ Res. 2014 Mar 28;114(7):1114-24. doi: 10.1161/CIRCRESAHA.114.303391. Epub 2014 Feb 21.

PubMed [citation]
PMID:
24563457
PMCID:
PMC3990285

Mutations in calmodulin cause ventricular tachycardia and sudden cardiac death.

Nyegaard M, Overgaard MT, Søndergaard MT, Vranas M, Behr ER, Hildebrandt LL, Lund J, Hedley PL, Camm AJ, Wettrell G, Fosdal I, Christiansen M, Børglum AD.

Am J Hum Genet. 2012 Oct 5;91(4):703-12. doi: 10.1016/j.ajhg.2012.08.015.

PubMed [citation]
PMID:
23040497
PMCID:
PMC3484646
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000056752.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a 23-year-old Iraqi woman with catecholaminergic polymorphic ventricular tachycardia (CPVT4; 614916), Nyegaard et al. (2012) identified heterozygosity for a de novo 293A-G transition in exon 5 of the CALM1 gene, resulting in an asn97-to-ser (N97S) substitution at a highly conserved Ca(2+)-binding residue within the high-affinity binding-site III in the calmodulin C domain. The mutation was not found in her unaffected parents or in 500 Danish controls, and the patient was negative for mutation in 8 other arrhythmia-associated genes. At age 4 years, the patient underwent cardiac arrest due to ventricular fibrillation while running; she was stabilized by treatment with a beta-1 adrenergic receptor blocker. Electrocardiography (ECG) showed prominent U-waves in anterior leads but no evidence for long QT or Brugada syndromes. At 12 years of age, an off-medication exercise ECG demonstrated ventricular ectopy with couplets and triplets of varying morphology, which appeared to be bidirectional at times. At age 15, she suffered a second cardiac arrest and underwent implantation of an internal cardiac defibrillator (ICD). Functional analysis demonstrated that the mutant had significantly reduced Ca(2+) affinity compared to wildtype calmodulin. In addition, for the N97S mutant, calmodulin-RYR2 (180902) interaction was defective at low intracellular Ca(2+) concentrations and restored at moderate to high Ca(2+) concentrations.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From GeneReviews, SCV000147940.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature onlynot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Nyegaard lab; Aarhus University, SCV000187714.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednoresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot provideddiscovery1not provided1not provided

From Center for Medical Genetics Ghent, University of Ghent, SCV000299265.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 9, 2024