U.S. flag

An official website of the United States government

NM_144605.5(SEPTIN12):c.589G>A (p.Asp197Asn) AND Spermatogenic failure 10

Germline classification:
risk factor (2 submissions)
Last evaluated:
Apr 1, 2012
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000030757.4

Allele description [Variation Report for NM_144605.5(SEPTIN12):c.589G>A (p.Asp197Asn)]

NM_144605.5(SEPTIN12):c.589G>A (p.Asp197Asn)

Gene:
SEPTIN12:septin 12 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p13.3
Genomic location:
Preferred name:
NM_144605.5(SEPTIN12):c.589G>A (p.Asp197Asn)
HGVS:
  • NC_000016.10:g.4783690C>T
  • NG_030315.1:g.9832G>A
  • NM_001154458.3:c.451G>A
  • NM_144605.5:c.589G>AMANE SELECT
  • NP_001147930.1:p.Asp151Asn
  • NP_653206.2:p.Asp197Asn
  • NC_000016.9:g.4833691C>T
  • NM_144605.3:c.589G>A
  • Q8IYM1:p.Asp197Asn
Protein change:
D151N; ASP197ASN
Links:
UniProtKB: Q8IYM1#VAR_068098; OMIM: 611562.0003; dbSNP: rs371195126
NCBI 1000 Genomes Browser:
rs371195126
Molecular consequence:
  • NM_001154458.3:c.451G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_144605.5:c.589G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Spermatogenic failure 10 (SPGF10)
Synonyms:
SPERMATOGENIC FAILURE WITH DEFECTIVE SPERM ANNULUS; SPERMATOGENIC FAILURE 10, SUSCEPTIBILITY TO
Identifiers:
MONDO: MONDO:0013901; MedGen: C3553793; Orphanet: 276234; OMIM: 614822

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000053418OMIM
no assertion criteria provided
risk factor
(Apr 1, 2012)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

SCV000154687Reproductive Endocrinology and immunology College of Medicine, National Cheng Kung University
no classification provided
not providednot providednot provided

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providednot providednot providednot providednot providednot provided1not providedliterature only

Citations

PubMed

SEPT12 mutations cause male infertility with defective sperm annulus.

Kuo YC, Lin YH, Chen HI, Wang YY, Chiou YW, Lin HH, Pan HA, Wu CM, Su SM, Hsu CC, Kuo PL.

Hum Mutat. 2012 Apr;33(4):710-9. doi: 10.1002/humu.22028. Epub 2012 Feb 20.

PubMed [citation]
PMID:
22275165

Details of each submission

From OMIM, SCV000053418.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a 33-year-old infertile male with spermatogenic failure (SPGF10; 614822), Kuo et al. (2012) identified heterozygosity for a c.589G-A transition (c.589G-A, NM_144605.3) in exon 6 of the SEPT12 gene, resulting in an asp197-to-asn (D197N) substitution at a highly conserved residue in the guanine-recognition site of the GTPase domain. The patient had oligoasthenozoospermia, with a sperm count of 0.9 x 10(6)/ml, morphology that was 80% abnormal, and a total motility of 22%. The mutation was not found in 200 fertile men with normal semen parameters. Functional analysis demonstrated that D197N mutant interfered with GTP binding and restricted filament formation of wildtype SEPT12 in a dose-dependent manner. Immunofluorescence staining showed that about 56% of the patient's abnormal sperm did not show a SEPT12 signal, compared to only about 15% of abnormal-appearing sperm from fertile men. In the patient, loss of annulus SEPT12 or SEPT4 (603696) signals were observed in sperm with abnormal morphology, indicating that SEPT12 interacts with SEPT4 to form a septin protein complex at the annulus. Some D197N sperm contained a deformed tail with reduced diameter at the midpiece-principal piece junction (annulus site).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Reproductive Endocrinology and immunology College of Medicine, National Cheng Kung University, SCV000154687.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot providednot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not providednot provided1not providednot providednot providednot providednot providednot provided

Last Updated: Jun 2, 2024