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NM_000162.5(GCK):c.630G>T (p.Met210Ile) AND Maturity-onset diabetes of the young type 2

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Aug 18, 2011
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000029899.2

Allele description [Variation Report for NM_000162.5(GCK):c.630G>T (p.Met210Ile)]

NM_000162.5(GCK):c.630G>T (p.Met210Ile)

Gene:
GCK:glucokinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7p13
Genomic location:
Preferred name:
NM_000162.5(GCK):c.630G>T (p.Met210Ile)
Other names:
NM_000162.5(GCK):c.630G>T
HGVS:
  • NC_000007.14:g.44149809C>A
  • NG_008847.2:g.53362G>T
  • NM_000162.5:c.630G>TMANE SELECT
  • NM_001354800.1:c.630G>T
  • NM_033507.3:c.633G>T
  • NM_033508.3:c.627G>T
  • NP_000153.1:p.Met210Ile
  • NP_001341729.1:p.Met210Ile
  • NP_277042.1:p.Met211Ile
  • NP_277043.1:p.Met209Ile
  • LRG_1074t1:c.630G>T
  • LRG_1074t2:c.633G>T
  • LRG_1074:g.53362G>T
  • LRG_1074p1:p.Met210Ile
  • LRG_1074p2:p.Met211Ile
  • NC_000007.13:g.44189408C>A
  • NM_000162.3:c.630G>T
Protein change:
M209I
Links:
dbSNP: rs193922313
NCBI 1000 Genomes Browser:
rs193922313
Molecular consequence:
  • NM_000162.5:c.630G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354800.1:c.630G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033507.3:c.633G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033508.3:c.627G>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
2

Condition(s)

Name:
Maturity-onset diabetes of the young type 2
Synonyms:
MODY type 2; Diabetes mellitus MODY type 2; MODY glucokinase-related; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007453; MedGen: C0342277; Orphanet: 552; OMIM: 125851

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000052554Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
likely pathogenic
(Aug 18, 2011)
germlinecuration, clinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedcuration
not providedgermlineunknown2not providednot providednot providednot providedclinical testing

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV000052554.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcurationnot provided
2not providednot providednot providednot providedclinical testingnot provided
3not providednot providednot providednot providedclinical testingnot provided

Description

Converted during submission to Likely pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providedBloodassert pathogenicitynot providednot providednot providednot provided
2germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 2
3germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 3

Co-occurrences

#ZygosityAllelesNumber of Observations
2SingleHeterozygoteGCK:c.1253+8C>T1
3SingleHeterozygoteTCF1:c.1545G>A, TCF1:c.864G>C, TCF1:c.1720A>G1

Last Updated: May 1, 2024