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NM_000162.5(GCK):c.1285A>C (p.Arg429=) AND Maturity-onset diabetes of the young type 2

Germline classification:
Likely benign (1 submission)
Last evaluated:
Aug 18, 2011
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000029855.10

Allele description [Variation Report for NM_000162.5(GCK):c.1285A>C (p.Arg429=)]

NM_000162.5(GCK):c.1285A>C (p.Arg429=)

Gene:
GCK:glucokinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7p13
Genomic location:
Preferred name:
NM_000162.5(GCK):c.1285A>C (p.Arg429=)
Other names:
NM_000162.5(GCK):c.1285A>C; p.Arg429=
HGVS:
  • NC_000007.14:g.44145249T>G
  • NG_008847.2:g.57922A>C
  • NM_000162.5:c.1285A>CMANE SELECT
  • NM_001354800.1:c.1285A>C
  • NM_001354801.1:c.274A>C
  • NM_001354802.1:c.145A>C
  • NM_001354803.2:c.319A>C
  • NM_033507.3:c.1288A>C
  • NM_033508.3:c.1282A>C
  • NP_000153.1:p.Arg429=
  • NP_001341729.1:p.Arg429=
  • NP_001341730.1:p.Arg92=
  • NP_001341731.1:p.Arg49=
  • NP_001341732.1:p.Arg107=
  • NP_277042.1:p.Arg430=
  • NP_277043.1:p.Arg428=
  • LRG_1074t1:c.1285A>C
  • LRG_1074t2:c.1288A>C
  • LRG_1074:g.57922A>C
  • LRG_1074p1:p.Arg429=
  • LRG_1074p2:p.Arg430=
  • NC_000007.13:g.44184848T>G
  • NM_000162.3:c.1285A>C
Links:
dbSNP: rs140672134
NCBI 1000 Genomes Browser:
rs140672134
Molecular consequence:
  • NM_000162.5:c.1285A>C - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354800.1:c.1285A>C - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354801.1:c.274A>C - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354802.1:c.145A>C - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354803.2:c.319A>C - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_033507.3:c.1288A>C - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_033508.3:c.1282A>C - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
1

Condition(s)

Name:
Maturity-onset diabetes of the young type 2
Synonyms:
MODY type 2; Diabetes mellitus MODY type 2; MODY glucokinase-related; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007453; MedGen: C0342277; Orphanet: 552; OMIM: 125851

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000052510Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
likely benign
(Aug 18, 2011)
germlinecuration, clinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedcuration
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV000052510.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcurationnot provided
2not providednot providednot providednot providedclinical testingnot provided

Description

Converted during submission to Likely benign.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providedBloodassert pathogenicitynot providednot providednot providednot provided
2germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 2

Co-occurrences

#ZygosityAllelesNumber of Observations
2SingleHeterozygoteGCK:c.106C>T, HNF4A:c.201C>T, HNF4A:c.116-5C>T, TCF1:c.864G>C, TCF1:c.1720A>G1

Last Updated: Nov 3, 2024