U.S. flag

An official website of the United States government

NM_000053.4(ATP7B):c.2855G>A (p.Arg952Lys) AND Wilson disease

Germline classification:
Benign (9 submissions)
Last evaluated:
Feb 5, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000029357.39

Allele description [Variation Report for NM_000053.4(ATP7B):c.2855G>A (p.Arg952Lys)]

NM_000053.4(ATP7B):c.2855G>A (p.Arg952Lys)

Gene:
ATP7B:ATPase copper transporting beta [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q14.3
Genomic location:
Preferred name:
NM_000053.4(ATP7B):c.2855G>A (p.Arg952Lys)
HGVS:
  • NC_000013.11:g.51949672C>T
  • NG_008806.1:g.66823G>A
  • NM_000053.4:c.2855G>AMANE SELECT
  • NM_001005918.3:c.2244+335G>A
  • NM_001243182.2:c.2522G>A
  • NM_001330578.2:c.2621G>A
  • NM_001330579.2:c.2603G>A
  • NP_000044.2:p.Arg952Lys
  • NP_000044.2:p.Arg952Lys
  • NP_001230111.1:p.Arg841Lys
  • NP_001317507.1:p.Arg874Lys
  • NP_001317508.1:p.Arg868Lys
  • NC_000013.10:g.52523808C>T
  • NM_000053.3:c.2855G>A
  • NM_001005918.2:c.2244+335G>A
  • P35670:p.Arg952Lys
Protein change:
R841K
Links:
UniProtKB: P35670#VAR_000746; dbSNP: rs732774
NCBI 1000 Genomes Browser:
rs732774
Molecular consequence:
  • NM_001005918.3:c.2244+335G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000053.4:c.2855G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001243182.2:c.2522G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001330578.2:c.2621G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001330579.2:c.2603G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
87249

Condition(s)

Name:
Wilson disease (WND)
Synonyms:
Wilson's disease; Hepatolenticular degeneration
Identifiers:
MONDO: MONDO:0010200; MedGen: C0019202; Orphanet: 905; OMIM: 277900

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000052004Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
benign
(Aug 18, 2011)
germlinecuration, clinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link,

SCV000384666Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification Criteria 13 December 2019)
Benign
(Jan 13, 2018)
germlineclinical testing

Citation Link,

SCV000602587ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2021)
Benign
(Mar 8, 2022)
germlineclinical testing

Citation Link,

SCV000733358Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus
no assertion criteria provided
Benigngermlineclinical testing

SCV001459717Natera, Inc.
no assertion criteria provided
Benign
(Sep 16, 2020)
germlineclinical testing

SCV001720717Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Benign
(Feb 1, 2024)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV001750135Genome-Nilou Lab
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benign
(Jul 1, 2021)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV004362480Color Diagnostics, LLC DBA Color Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benign
(Mar 5, 2018)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV004845464All of Us Research Program, National Institutes of Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benign
(Feb 5, 2024)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing, curation
not providedgermlineunknown87248not providednot provided108544not providedclinical testing
not providedgermlinenonot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

The Wilson disease gene: spectrum of mutations and their consequences.

Thomas GR, Forbes JR, Roberts EA, Walshe JM, Cox DW.

Nat Genet. 1995 Feb;9(2):210-7. Erratum in: Nat Genet 1995 Apr;9(4):451.

PubMed [citation]
PMID:
7626145

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818
See all PubMed Citations (3)

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV000052004.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcuration PubMed (1)
2not providednot providednot providednot providedclinical testing PubMed (1)
3not providednot providednot providednot providedclinical testing PubMed (1)
4not providednot providednot providednot providedclinical testing PubMed (1)
5not providednot providednot providednot providedclinical testing PubMed (1)
6not providednot providednot providednot providedclinical testing PubMed (1)
7not providednot providednot providednot providedclinical testing PubMed (1)
8not providednot providednot providednot providedclinical testing PubMed (1)
9not providednot providednot providednot providedclinical testing PubMed (1)
10not providednot providednot providednot providedclinical testing PubMed (1)
11not providednot providednot providednot providedclinical testing PubMed (1)
12not providednot providednot providednot providedclinical testing PubMed (1)
13not providednot providednot providednot providedclinical testing PubMed (1)
14not providednot providednot providednot providedclinical testing PubMed (1)
15not providednot providednot providednot providedclinical testing PubMed (1)
16not providednot providednot providednot providedclinical testing PubMed (1)
17not providednot providednot providednot providedclinical testing PubMed (1)
18not providednot providednot providednot providedclinical testing PubMed (1)
19not providednot providednot providednot providedclinical testing PubMed (1)
20not providednot providednot providednot providedclinical testing PubMed (1)
21not providednot providednot providednot providedclinical testing PubMed (1)
22not providednot providednot providednot providedclinical testing PubMed (1)
23not providednot providednot providednot providedclinical testing PubMed (1)
24not providednot providednot providednot providedclinical testing PubMed (1)
25not providednot providednot providednot providedclinical testing PubMed (1)
26not providednot providednot providednot providedclinical testing PubMed (1)
27not providednot providednot providednot providedclinical testing PubMed (1)
28not providednot providednot providednot providedclinical testing PubMed (1)
29not providednot providednot providednot providedclinical testing PubMed (1)
30not providednot providednot providednot providedclinical testing PubMed (1)
31not providednot providednot providednot providedclinical testing PubMed (1)
32not providednot providednot providednot providedclinical testing PubMed (1)
33not providednot providednot providednot providedclinical testing PubMed (1)
34not providednot providednot providednot providedclinical testing PubMed (1)
35not providednot providednot providednot providedclinical testing PubMed (1)
36not providednot providednot providednot providedclinical testing PubMed (1)
37not providednot providednot providednot providedclinical testing PubMed (1)
38not providednot providednot providednot providedclinical testing PubMed (1)
39not providednot providednot providednot providedclinical testing PubMed (1)
40not providednot providednot providednot providedclinical testing PubMed (1)
41not providednot providednot providednot providedclinical testing PubMed (1)
42not providednot providednot providednot providedclinical testing PubMed (1)
43not providednot providednot providednot providedclinical testing PubMed (1)
44not providednot providednot providednot providedclinical testing PubMed (1)
45not providednot providednot providednot providedclinical testing PubMed (1)
46not providednot providednot providednot providedclinical testing PubMed (1)
47not providednot providednot providednot providedclinical testing PubMed (1)
48not providednot providednot providednot providedclinical testing PubMed (1)
49not providednot providednot providednot providedclinical testing PubMed (1)
50not providednot providednot providednot providedclinical testing PubMed (1)
51not providednot providednot providednot providedclinical testing PubMed (1)
52not providednot providednot providednot providedclinical testing PubMed (1)
53not providednot providednot providednot providedclinical testing PubMed (1)
54not providednot providednot providednot providedclinical testing PubMed (1)
55not providednot providednot providednot providedclinical testing PubMed (1)
56not providednot providednot providednot providedclinical testing PubMed (1)
57not providednot providednot providednot providedclinical testing PubMed (1)
58not providednot providednot providednot providedclinical testing PubMed (1)
59not providednot providednot providednot providedclinical testing PubMed (1)
60not providednot providednot providednot providedclinical testing PubMed (1)
61not providednot providednot providednot providedclinical testing PubMed (1)
62not providednot providednot providednot providedclinical testing PubMed (1)
63not providednot providednot providednot providedclinical testing PubMed (1)
64not providednot providednot providednot providedclinical testing PubMed (1)

Description

Converted during submission to Benign.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providedBloodassert pathogenicitynot providednot providednot providednot provided
2germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 2
3germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 3
4germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 4
5germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 5
6germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 6
7germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 7
8germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 8
9germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 9
10germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 10
11germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 11
12germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 12
13germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 13
14germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 14
15germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 15
16germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 16
17germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 17
18germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 18
19germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 19
20germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 20
21germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 21
22germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 22
23germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 23
24germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 24
25germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 25
26germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 26
27germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 27
28germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 28
29germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 29
30germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 30
31germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 31
32germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 32
33germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 33
34germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 34
35germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 35
36germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 36
37germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 37
38germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 38
39germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 39
40germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 40
41germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 41
42germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 42
43germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 43
44germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 44
45germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 45
46germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 46
47germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 47
48germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 48
49germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 49
50germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 50
51germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 51
52germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 52
53germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 53
54germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 54
55germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 55
56germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 56
57germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 57
58germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 58
59germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 59
60germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 60
61germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 61
62germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 62
63germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 63
64germlineunknownnot providedBloodassert pathogenicitynot providednot providednot provided See 64

Co-occurrences

#ZygosityAllelesNumber of Observations
2SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
3SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.3045G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
4SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2973G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
5HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
6SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.3009G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
7HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
8HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3620A>G, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3419T>C1
9SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
10HomozygoteATP7B:c.2866-13G>C, ATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3419T>C, MEFV:c.942C>T, MEFV:c.495C>A, MEFV:c.306T>C, MEFV:c.1764G>A, MEFV:c.1530T>C, MEFV:c.1428A>G, MEFV:c.1422G>A1
11HomozygoteATP7B:c.3009G>A, ATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3419T>C, ATP7B:c.3700G>T, ATP7B:c.4058G>A1
12SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
13SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2973G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
14SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2973G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
15HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
16HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.3060+16G>T1
17SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
18SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3054G>A1
19SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.4414G>A1
20HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
21SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
22SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2973G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.98T>C, ATP7B:c.2953T>C1
23HomozygoteATP7B:c.2866-13G>C, ATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3419T>C1
24SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.3009G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C1
25HomozygoteATP7B:c.3009G>A, ATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
26SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2973G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
27SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
28HomozygoteATP7B:c.2866-13G>C, ATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3419T>C1
29SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
30SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
31SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3557-6C>T1
32SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.3045G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.2972C>T1
33SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2973G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
34HomozygoteATP7B:c.3045G>A, ATP7B:c.2866-13G>C, ATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3419T>C1
35SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2866-13G>C, ATP7B:c.2495A>G, ATP7B:c.3419T>C1
36HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3207C>A1
37HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
38SingleHeterozygoteATP7B:c.4302G>A, ATP7B:c.1707+9T>C, ATP7B:c.3620A>G, ATP7B:c.3419T>C, ATP7B:c.3366A>G1
39SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
40HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
41SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
42SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C1
43SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
44SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2866-13G>C, ATP7B:c.2495A>G, ATP7B:c.3419T>C1
45SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2973G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
46HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
47HomozygoteATP7B:c.2866-13G>C, ATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.3060+16G>T1
48SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2866-13G>C, ATP7B:c.2495A>G, ATP7B:c.3419T>C1
49SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
50SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
51HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.1934T>G1
52SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3489C>T, FBN1:c.6997+17C>G, FBN1:c.1415G>A, TGFBR2:c.263+7A>G1
53SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2866-13G>C, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
54HomozygoteATP7B:c.2866-13G>C, ATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3419T>C1
55SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3955C>T, ATP7B:c.2930C>T1
56HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2866-13G>C, ATP7B:c.2495A>G, ATP7B:c.3620A>G, ATP7B:c.3419T>C, ATP7B:c.2305A>G1
57HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
58SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.3009G>A, ATP7B:c.2973G>A, ATP7B:c.2495A>G, ATP7B:c.3419T>C1
59HomozygoteATP7B:c.3009G>A, ATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3419T>C1
60SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.1216T>G1
61SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2866-13G>C, ATP7B:c.2495A>G, ATP7B:c.3419T>C1
62HomozygoteATP7B:c.3588C>T, ATP7B:c.2866-13G>C, ATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.1366G>C, ATP7B:c.1216T>G, ATP7B:c.3419T>C1
63SingleHeterozygoteATP7B:c.3903+6C>T, ATP7B:c.2866-13G>C, ATP7B:c.2495A>G, ATP7B:c.1216T>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C, ATP7B:c.4301C>T1
64HomozygoteATP7B:c.3903+6C>T, ATP7B:c.2495A>G, ATP7B:c.1216T>G, ATP7B:c.3419T>C, ATP7B:c.1366G>C1

From Illumina Laboratory Services, Illumina, SCV000384666.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV000602587.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV000733358.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Natera, Inc., SCV001459717.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001720717.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Genome-Nilou Lab, SCV001750135.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenonot providednot providednot providednot providednot providednot providednot provided

From Color Diagnostics, LLC DBA Color Health, SCV004362480.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From All of Us Research Program, National Institutes of Health, SCV004845464.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided87185not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown108544not providednot provided87185not providednot providednot provided

Last Updated: Oct 13, 2024