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NM_033360.4(KRAS):c.439A>G (p.Lys147Glu) AND Cardiofaciocutaneous syndrome 2

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 15, 2013
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000024618.21

Allele description [Variation Report for NM_033360.4(KRAS):c.439A>G (p.Lys147Glu)]

NM_033360.4(KRAS):c.439A>G (p.Lys147Glu)

Gene:
KRAS:KRAS proto-oncogene, GTPase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12p12.1
Genomic location:
Preferred name:
NM_033360.4(KRAS):c.439A>G (p.Lys147Glu)
HGVS:
  • NC_000012.12:g.25225625T>C
  • NG_007524.2:g.30379A>G
  • NM_001369786.1:c.439A>G
  • NM_001369787.1:c.439A>G
  • NM_004985.5:c.439A>GMANE SELECT
  • NM_033360.4:c.439A>G
  • NP_001356715.1:p.Lys147Glu
  • NP_001356716.1:p.Lys147Glu
  • NP_004976.2:p.Lys147Glu
  • NP_203524.1:p.Lys147Glu
  • LRG_344t1:c.439A>G
  • LRG_344t2:c.439A>G
  • LRG_344:g.30379A>G
  • LRG_344p1:p.Lys147Glu
  • LRG_344p2:p.Lys147Glu
  • NC_000012.11:g.25378559T>C
  • NG_007524.1:g.30296A>G
  • NM_004985.3:c.439A>G
  • P01116:p.Lys147Glu
Protein change:
K147E; LYS147GLU
Links:
UniProtKB: P01116#VAR_069785; OMIM: 190070.0022; dbSNP: rs387907206
NCBI 1000 Genomes Browser:
rs387907206
Molecular consequence:
  • NM_001369786.1:c.439A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369787.1:c.439A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004985.5:c.439A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033360.4:c.439A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardiofaciocutaneous syndrome 2 (CFC2)
Identifiers:
MONDO: MONDO:0014112; MedGen: C3809005; Orphanet: 1340; OMIM: 615278

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000050484OMIM
no assertion criteria provided
Pathogenic
(Jan 15, 2013)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Two novel germline KRAS mutations: expanding the molecular and clinical phenotype.

Stark Z, Gillessen-Kaesbach G, Ryan MM, Cirstea IC, Gremer L, Ahmadian MR, Savarirayan R, Zenker M.

Clin Genet. 2012 Jun;81(6):590-4. doi: 10.1111/j.1399-0004.2011.01754.x. Epub 2011 Aug 18.

PubMed [citation]
PMID:
21797849

Diverging gain-of-function mechanisms of two novel KRAS mutations associated with Noonan and cardio-facio-cutaneous syndromes.

Cirstea IC, Gremer L, Dvorsky R, Zhang SC, Piekorz RP, Zenker M, Ahmadian MR.

Hum Mol Genet. 2013 Jan 15;22(2):262-70. doi: 10.1093/hmg/dds426. Epub 2012 Oct 11.

PubMed [citation]
PMID:
23059812

Details of each submission

From OMIM, SCV000050484.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In a girl with variable features of cardiofaciocutaneous syndrome (CFC2; 615278), Stark et al. (2012) identified a de novo heterozygous 439A-G transition in exon 4 of the KRAS gene, resulting in a lys147-to-glu (K147E) substitution in a highly conserved residue close to known mutations. Lys147 is part of a motif involved in the binding network for guanine nucleotides, which determine the activation state of RAS proteins. In vitro studies demonstrated that the K147E mutant protein predominates in the active GTP-bound form, probably due to facilitated uncatalyzed GDP/GTP exchange. The patient was 1 of a female dizygotic twin pair; the other twin was unaffected. The patient had a high birth weight, macrocephaly, and abnormal craniofacial features, including proptosis, hypertelorism, downslanting palpebral fissures, low-set ears, and short neck, suggestive of Noonan syndrome. Reexamination at age 3.5 years showed coarser facial features more consistent with CFC. She also had hypertrophy of the interventricular myocardial septum, myocardial hypertrophy, and pulmonic stenosis. She had mildly delayed development.

K147 is a conserved amino acid within a motif required for guanine base binding by KRAS. K147 is also ubiquitinated, leading to increased KRAS activation by GEF proteins. Using in vitro assays and transfected COS-7 cells, Cirstea et al. (2013) found that the K147E mutation significantly increased nucleotide dissociation in KRAS, generating a self-activating protein that acted independently of upstream signaling. However, overactivity of K147E mutant KRAS was subject to normal downregulation by RasGAP (see 139150) and had 2-fold lower affinity for RAF1 kinase (164760).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024