U.S. flag

An official website of the United States government

NM_001330260.2(SCN8A):c.5302A>G (p.Asn1768Asp) AND Developmental and epileptic encephalopathy, 13

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Mar 9, 2012
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000023031.14

Allele description [Variation Report for NM_001330260.2(SCN8A):c.5302A>G (p.Asn1768Asp)]

NM_001330260.2(SCN8A):c.5302A>G (p.Asn1768Asp)

Gene:
SCN8A:sodium voltage-gated channel alpha subunit 8 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q13.13
Genomic location:
Preferred name:
NM_001330260.2(SCN8A):c.5302A>G (p.Asn1768Asp)
HGVS:
  • NC_000012.12:g.51806788A>G
  • NG_021180.3:g.221831A>G
  • NM_001177984.3:c.5179A>G
  • NM_001330260.2:c.5302A>GMANE SELECT
  • NM_001369788.1:c.5179A>G
  • NM_014191.4:c.5302A>G
  • NP_001171455.1:p.Asn1727Asp
  • NP_001317189.1:p.Asn1768Asp
  • NP_001356717.1:p.Asn1727Asp
  • NP_055006.1:p.Asn1768Asp
  • LRG_1389t1:c.5302A>G
  • LRG_1389t2:c.5302A>G
  • LRG_1389:g.221831A>G
  • LRG_1389p1:p.Asn1768Asp
  • LRG_1389p2:p.Asn1768Asp
  • NC_000012.11:g.52200572A>G
  • NM_014191.3:c.5302A>G
  • Q9UQD0:p.Asn1768Asp
Protein change:
N1727D; ASN1768ASP
Links:
UniProtKB: Q9UQD0#VAR_067539; OMIM: 600702.0002; dbSNP: rs202151337
NCBI 1000 Genomes Browser:
rs202151337
Molecular consequence:
  • NM_001177984.3:c.5179A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001330260.2:c.5302A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001369788.1:c.5179A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_014191.4:c.5302A>G - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
  • Increase in persistent current [Functional Epilepsy Nomenclature for Ion Channels: FENICS-0040]
  • Increase in resurgent current [Functional Epilepsy Nomenclature for Ion Channels: FENICS-0099]
  • Overall gain-of-function effect with respect to biophysical channel activity [Functional Epilepsy Nomenclature for Ion Channels: FENICS-0140]
  • Severe depolarizing shift of voltage dependence of fast inactivation [Functional Epilepsy Nomenclature for Ion Channels: FENICS-0064]

Condition(s)

Name:
Developmental and epileptic encephalopathy, 13 (DEE13)
Synonyms:
Early infantile epileptic encephalopathy 13; SCN8A-Related Epilepsy
Identifiers:
MONDO: MONDO:0013801; MedGen: C3281191; Orphanet: 442835; OMIM: 614558

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000044322OMIM
no assertion criteria provided
Pathogenic
(Mar 9, 2012)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

SCV000298212GeneReviews
no classification provided
not providedgermlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedliterature only
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

De novo pathogenic SCN8A mutation identified by whole-genome sequencing of a family quartet affected by infantile epileptic encephalopathy and SUDEP.

Veeramah KR, O'Brien JE, Meisler MH, Cheng X, Dib-Hajj SD, Waxman SG, Talwar D, Girirajan S, Eichler EE, Restifo LL, Erickson RP, Hammer MF.

Am J Hum Genet. 2012 Mar 9;90(3):502-10. doi: 10.1016/j.ajhg.2012.01.006. Epub 2012 Feb 23.

PubMed [citation]
PMID:
22365152
PMCID:
PMC3309181

Details of each submission

From OMIM, SCV000044322.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a girl with developmental and epileptic encephalopathy-13 (DEE13; 614558), Veeramah et al. (2012) identified a de novo heterozygous 5302A-G transition in the SCN8A gene, resulting in an asn1768-to-asp (N1768D) substitution in a highly conserved residue in the final transmembrane segment adjacent to the C-terminal cytoplasmic domain. The mutation was identified by whole-genome sequencing. Expression of the mutant protein in a neuronal cell line showed that it caused persistent sodium currents, incomplete channel inactivation, and a depolarizing shift in the voltage dependence of steady-state fast inactivation. Current-clamp analysis in rat hippocampal neurons transfected with the mutant protein showed increased spontaneous firing, paroxysmal-depolarizing-shift-like complexes, and an increased firing frequency, consistent with a dominant gain-of-function phenotype. All of these studies were consistent with neuronal hyperexcitability. Whole-genome sequencing also identified putative recessive variants in the NRP2 (602070) and UNC13C (614568) genes in the proband, which may have contributed to the phenotype. The patient developed refractory generalized seizures at age 6 months. At age 4 years, the seizure phenotype changed to epileptic spasms, followed by regression of speech and language skills. She also had developmental delay, intellectual disability, autism, hypotonia, and difficulties with coordination and balance. Initial electroencephalogram (EEG) showed bifrontal spikes and brief bursts of generalized spike-wave activity. Later EEG showed diffuse slowing, multifocal spikes, and frontally predominant generalized spikes. Brain MRI was normal. The patient died suddenly at age 15 years. There was no family history of a similar disorder.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From GeneReviews, SCV000298212.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024