U.S. flag

An official website of the United States government

NM_000342.4(SLC4A1):c.[2687_2699dup;2710_2718del] AND Autosomal dominant distal renal tubular acidosis

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 15, 2002
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000019355.27

Alleles description [Variation Report for NM_000342.4(SLC4A1):c.[2687_2699dup;2710_2718del]]

NM_000342.4(SLC4A1):c.2687_2699dup (p.Gly900_Arg901insTer)

Gene:
SLC4A1:solute carrier family 4 member 1 (Diego blood group) [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
17q21.31
Genomic location:
Preferred name:
NM_000342.4(SLC4A1):c.2687_2699dup (p.Gly900_Arg901insTer)
HGVS:
  • NC_000017.11:g.44250496_44250508dup
  • NG_007498.1:g.22628_22640dup
  • NM_000342.4:c.2687_2699dupMANE SELECT
  • NP_000333.1:p.Gly900_Arg901insTer
  • LRG_803t1:c.2687_2699dup
  • LRG_803:g.22628_22640dup
  • LRG_803p1:p.Gly900_Arg901insTer
  • NC_000017.10:g.42327864_42327876dup
Links:
OMIM: 109270.0025
Molecular consequence:
  • NM_000342.4:c.2687_2699dup - inframe_insertion - [Sequence Ontology: SO:0001821]
  • NM_000342.4:c.2687_2699dup - nonsense - [Sequence Ontology: SO:0001587]

NM_000342.4(SLC4A1):c.2710_2718del (p.Tyr904_Glu906del)

Gene:
SLC4A1:solute carrier family 4 member 1 (Diego blood group) [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
17q21.31
Genomic location:
Preferred name:
NM_000342.4(SLC4A1):c.2710_2718del (p.Tyr904_Glu906del)
HGVS:
  • NC_000017.11:g.44250479_44250487del
  • NG_007498.1:g.22651_22659del
  • NM_000342.4:c.2710_2718delMANE SELECT
  • NP_000333.1:p.Tyr904_Glu906del
  • LRG_803t1:c.2710_2718del
  • LRG_803:g.22651_22659del
  • LRG_803p1:p.Tyr904_Glu906del
  • NC_000017.10:g.42327847_42327855del
Links:
OMIM: 109270.0025
Molecular consequence:
  • NM_000342.4:c.2710_2718del - inframe_deletion - [Sequence Ontology: SO:0001822]

Condition(s)

Name:
Autosomal dominant distal renal tubular acidosis (DRTA1)
Synonyms:
RTA, classic type; RTA, gradient type; Renal tubular acidosis 1; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0008368; MedGen: CN280572; OMIM: 179800

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000039645OMIM
no assertion criteria provided
Pathogenic
(Dec 15, 2002)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Band 3 Walton, a C-terminal deletion associated with distal renal tubular acidosis, is expressed in the red cell membrane but retained internally in kidney cells.

Toye AM, Bruce LJ, Unwin RJ, Wrong O, Tanner MJ.

Blood. 2002 Jan 1;99(1):342-7.

PubMed [citation]
PMID:
11756190

Nephrocalcinosis: another cause of renal erythrocytosis.

Feest TG, Proctor S, Brown R, Wrong OM.

Br Med J. 1978 Aug 26;2(6137):605. No abstract available.

PubMed [citation]
PMID:
698610
PMCID:
PMC1607499
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000039645.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

Toye et al. (2002) reported studies of band-3 Walton, a C-terminal deletion associated with distal renal tubular acidosis (DRTA1; 179800), in 2 brothers (Karet et al., 1998). The insertion-deletion underlying band-3 Walton consisted of a 13-bp insertion after the first base of amino acid 900 in exon 20. In addition, deletion of 9 bp over the sequence that would have coded for amino acids tyr904 to glu906 of normal band-3 was also present. The net effect was a premature stop codon and deletion of the 11 COOH-terminal amino acids of the protein. The brothers were heterozygous for the mutation. They had thirst, polyuria, and occasional renal colic since childhood and were diagnosed as having distal renal tubular acidosis on the basis of acidosis and hypokalemia at ages 37 and 25 years, respectively. Red cell morphology was normal, but both patients had a tendency to erythremia, a recognized complication of nephrocalcinosis from various causes (Feest et al., 1978). The parents were dead, and there were no known living relatives for study. Toye et al. (2002) demonstrated that the band-3 Walton protein is expressed in the red cell membrane but retained internally in kidney cells.

Quilty et al. (2002) examined the effect of the 11-amino acid C-terminal deletion, which they called 901-stop, on the biosynthesis, folding, and trafficking of AE1 in transfected human embryonic kidney cells. The 901-stop mutation did not effect the folding of AE1, but it did alter its trafficking to the plasma membrane. Coexpression of wildtype and mutant proteins, mimicking the heterozygous state of the patients carrying the mutation (Karet et al., 1998), resulted in heterooligomer formation and impaired trafficking of the wildtype protein to the medial Golgi. Quilty et al. (2002) concluded that the altered trafficking of the mutant protein and its dominant-negative effect could explain both its effect on urine acidification and its dominant inheritance pattern.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 30, 2024