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NM_000342.4(SLC4A1):c.166A>G (p.Lys56Glu) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 1, 2009
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000019328.38

Allele description [Variation Report for NM_000342.4(SLC4A1):c.166A>G (p.Lys56Glu)]

NM_000342.4(SLC4A1):c.166A>G (p.Lys56Glu)

Gene:
SLC4A1:solute carrier family 4 member 1 (Diego blood group) [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17q21.31
Genomic location:
Preferred name:
NM_000342.4(SLC4A1):c.166A>G (p.Lys56Glu)
Other names:
SLC4A1, LYS56GLU (rs5036)
HGVS:
  • NC_000017.11:g.44261577T>C
  • NG_007498.1:g.11558A>G
  • NM_000342.4:c.166A>GMANE SELECT
  • NP_000333.1:p.Lys56Glu
  • LRG_803t1:c.166A>G
  • LRG_803:g.11558A>G
  • LRG_803p1:p.Lys56Glu
  • NC_000017.10:g.42338945T>C
  • NM_000342.3:c.166A>G
  • P02730:p.Lys56Glu
Protein change:
K56E; LYS56GLU
Links:
UniProtKB: P02730#VAR_000799; OMIM: 109270.0001; dbSNP: rs5036
NCBI 1000 Genomes Browser:
rs5036
Molecular consequence:
  • NM_000342.4:c.166A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
Band 3 memphis
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000039618OMIM
no assertion criteria provided
Pathogenic
(Mar 1, 2009)
germlineliterature only

PubMed (7)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Molecular defect of the band 3 protein in southeast Asian ovalocytosis.

Liu SC, Zhai S, Palek J, Golan DE, Amato D, Hassan K, Nurse GT, Babona D, Coetzer T, Jarolim P, et al.

N Engl J Med. 1990 Nov 29;323(22):1530-8.

PubMed [citation]
PMID:
2146504

Detection of a variant of protein 3, the major transmembrane protein of the human erythrocyte.

Mueller TJ, Morrison M.

J Biol Chem. 1977 Oct 10;252(19):6573-6.

PubMed [citation]
PMID:
893429
See all PubMed Citations (7)

Details of each submission

From OMIM, SCV000039618.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (7)

Description

In addition to the variants of band 3 leading to abnormalities of erythrocyte shape (Liu et al., 1990), Mueller and Morrison (1977) identified a polymorphism tentatively described as an elongation of the cytoplasmic domain, whose structure was still to be defined. Ranney et al. (1990) found a silent band 3 polymorphism, called band 3 Memphis, in all human populations with a frequency varying from one population to another. Yannoukakos et al. (1991) demonstrated that this electrophoretic variant is due to substitution of glutamic acid for lysine at position 56. An A-to-G substitution in the first base of codon 56 is responsible for the change.

Ideguchi et al. (1992) showed that the prevalence of the Memphis variant is particularly high in Japanese; the calculated gene frequency was 0.156, about 4 times higher than in Caucasians. They found that the transport rate of phosphoenolpyruvate in erythrocytes of homozygotes was decreased to about 80% of that in control cells and the rate in heterozygotes was at an intermediate level. They interpreted this as indicating that some structural changes in the cytoplasmic domain of band 3 influence the conformation of the anion transport system. The band 3 Memphis variant is characterized by a reduced mobility of proteolytic fragments derived from the N-terminus of the cytoplasmic domain of band 3 (cdb3).

Jarolim et al. (1992) found the AAG-to-GAG transition at codon 56 resulting in the lys56-to-glu substitution in all of 12 heterozygotes including 1 white, 1 black, 1 Chinese, 1 Filipino, 1 Malay, and 7 Melanesian subjects. Since most of the previously cloned mouse, rat, and chicken band 3 and band 3-related proteins contain glutamic acid in the position corresponding to amino acid 56 in the human band 3, Jarolim et al. (1992) proposed that the Memphis variant is the evolutionarily older form of band 3.

The Memphis polymorphism is also referred to as rs5036. Wilder et al. (2009) found that all 4 Indonesian chromosomes with the 27-bp deletion (109270.0002) also carried the Memphis polymorphism, suggesting that it is a target of recent natural selection.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024