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NM_000142.5(FGFR3):c.1111A>T (p.Ser371Cys) AND Thanatophoric dysplasia type 1

Germline classification:
Pathogenic (3 submissions)
Last evaluated:
Jun 29, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000017736.33

Allele description [Variation Report for NM_000142.5(FGFR3):c.1111A>T (p.Ser371Cys)]

NM_000142.5(FGFR3):c.1111A>T (p.Ser371Cys)

Gene:
FGFR3:fibroblast growth factor receptor 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4p16.3
Genomic location:
Preferred name:
NM_000142.5(FGFR3):c.1111A>T (p.Ser371Cys)
HGVS:
  • NC_000004.12:g.1804365A>T
  • NG_012632.1:g.16054A>T
  • NM_000142.5:c.1111A>TMANE SELECT
  • NM_001163213.2:c.1117A>T
  • NM_001354809.2:c.1111A>T
  • NM_001354810.2:c.1111A>T
  • NM_022965.4:c.931-459A>T
  • NP_000133.1:p.Ser371Cys
  • NP_000133.1:p.Ser371Cys
  • NP_001156685.1:p.Ser373Cys
  • NP_001341738.1:p.Ser371Cys
  • NP_001341739.1:p.Ser371Cys
  • LRG_1021t1:c.1111A>T
  • LRG_1021:g.16054A>T
  • LRG_1021p1:p.Ser371Cys
  • NC_000004.11:g.1806092A>T
  • NM_000142.3:c.1111A>T
  • NM_000142.4:c.1111A>T
  • NR_148971.2:n.1537A>T
  • P22607:p.Ser371Cys
Protein change:
S371C; SER371CYS
Links:
UniProtKB: P22607#VAR_004152; OMIM: 134934.0006; dbSNP: rs121913484
NCBI 1000 Genomes Browser:
rs121913484
Molecular consequence:
  • NM_022965.4:c.931-459A>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000142.5:c.1111A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001163213.2:c.1117A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354809.2:c.1111A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354810.2:c.1111A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_148971.2:n.1537A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Thanatophoric dysplasia type 1 (TD1)
Synonyms:
PLATYSPONDYLIC LETHAL SKELETAL DYSPLASIA, SAN DIEGO TYPE; LETHAL SHORT-LIMBED PLATYSPONDYLIC DWARFISM, SAN DIEGO TYPE
Identifiers:
MONDO: MONDO:0008546; MedGen: C1868678; Orphanet: 1860; Orphanet: 2655; OMIM: 187600

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000038014OMIM
no assertion criteria provided
Pathogenic
(Mar 1, 1995)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

SCV000086706GeneReviews
no classification provided
not providedunknownliterature only

PubMed (1)
[See all records that cite this PMID]

SCV004806403Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jun 29, 2024)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedunknownnot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Thanatophoric dysplasia (types I and II) caused by distinct mutations in fibroblast growth factor receptor 3.

Tavormina PL, Shiang R, Thompson LM, Zhu YZ, Wilkin DJ, Lachman RS, Wilcox WR, Rimoin DL, Cohn DH, Wasmuth JJ.

Nat Genet. 1995 Mar;9(3):321-8.

PubMed [citation]
PMID:
7773297

Thanatophoric Dysplasia.

French T, Savarirayan R.

2004 May 21 [updated 2023 May 18]. In: Adam MP, Feldman J, Mirzaa GM, Pagon RA, Wallace SE, Bean LJH, Gripp KW, Amemiya A, editors. GeneReviews(®) [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2024.

PubMed [citation]
PMID:
20301540
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000038014.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 1 of 39 individuals with thanatophoric dysplasis type I (TD1; 187600), Tavormina et al. (1995) found an A-to-T transversion at nucleotide 1111 that caused a ser371-to-cys substitution in the extracellular region of the FGFR3 protein.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From GeneReviews, SCV000086706.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownnot providednot providednot providedAssert pathogenicitynot providednot providednot providednot provided

From Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center, SCV004806403.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024