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NM_000518.5(HBB):c.3G>A (p.Met1Ile) AND Beta zero thalassemia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 1, 1993
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000016783.29

Allele description [Variation Report for NM_000518.5(HBB):c.3G>A (p.Met1Ile)]

NM_000518.5(HBB):c.3G>A (p.Met1Ile)

Genes:
LOC106099062:HBB recombination region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.3G>A (p.Met1Ile)
Other names:
Init CD ATG>ATA
HGVS:
  • NC_000011.10:g.5227019C>T
  • NG_000007.3:g.70597G>A
  • NG_042296.1:g.550C>T
  • NG_046672.1:g.4954C>T
  • NG_059281.1:g.5053G>A
  • NM_000518.5:c.3G>AMANE SELECT
  • NP_000509.1:p.Met1Ile
  • LRG_1232t1:c.3G>A
  • LRG_1232:g.5053G>A
  • LRG_1232p1:p.Met1Ile
  • NC_000011.9:g.5248249C>T
  • NM_000518.4:c.3G>A
  • p.Met1?
Protein change:
M1I; MET1ILE
Links:
OMIM: 141900.0430; dbSNP: rs33930702
NCBI 1000 Genomes Browser:
rs33930702
Molecular consequence:
  • NM_000518.5:c.3G>A - initiator_codon_variant - [Sequence Ontology: SO:0001582]
  • NM_000518.5:c.3G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Beta zero thalassemia
Identifiers:
MedGen: C0271980

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000037053OMIM
no assertion criteria provided
Pathogenic
(Jun 1, 1993)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A novel beta-thalassemia mutation (G-->A) at the initiation codon of the beta-globin gene.

Saba L, Meloni A, Sardu R, Travi M, Primignani P, Rosatelli MC, Cao A.

Hum Mutat. 1992;1(5):420-2. No abstract available.

PubMed [citation]
PMID:
1301952

Hb Karlskoga or alpha 2 beta (2)21(B3) Asp-->His: a new slow-moving variant found in Sweden.

Landin B.

Hemoglobin. 1993 Jun;17(3):201-8.

PubMed [citation]
PMID:
8330972

Details of each submission

From OMIM, SCV000037053.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In a typical beta-thalassemia (613985) carrier of Italian descent, Saba et al. (1992) demonstrated a G-to-A transition in the initiation codon of the HBB gene, producing a substitution of isoleucine for methionine. The absence of the initiation methionine led to defective beta-globin mRNA translation and probably determined the complete absence of beta-chain production. Indeed, initiation of translation may have occurred at the first downstream ATG sequence, which is located at codon 21-22; the resulting out-of-frame reading probably terminates at the new UGA termination codon at codon 60-61. Initiation codon mutations previously described in both the alpha (141850.0022) and beta (141900.0344) globin genes all result in complete inactivation of the affected globin gene.

In 7 members of 3 generations of a family living in northern Sweden, Landin et al. (1995) found an initiation codon mutation ATG-to-ATA of the HBB gene. The mutation changed the initiation codon from methionine to isoleucine and resulted in a beta-zero-thalassemic phenotype. The affected family members all presented hematologic findings typical for the beta-thalassemic trait, with slight anemia, marked microcytosis, and increased levels of Hb A2. See 141900.0345 for an initiation codon mutation ATG-to-ACG, which changes methionine to threonine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 9, 2024