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NM_000518.5(HBB):c.9T>A (p.His3Gln) AND HEMOGLOBIN OKAYAMA

Germline classification:
other (1 submission)
Last evaluated:
Dec 12, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000016529.4

Allele description [Variation Report for NM_000518.5(HBB):c.9T>A (p.His3Gln)]

NM_000518.5(HBB):c.9T>A (p.His3Gln)

Genes:
LOC106099062:HBB recombination region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.9T>A (p.His3Gln)
Other names:
H2Q
HGVS:
  • NC_000011.10:g.5227013A>T
  • NG_000007.3:g.70603T>A
  • NG_042296.1:g.544A>T
  • NG_046672.1:g.4948A>T
  • NG_059281.1:g.5059T>A
  • NM_000518.5:c.9T>AMANE SELECT
  • NP_000509.1:p.His3Gln
  • LRG_1232t1:c.9T>A
  • LRG_1232:g.5059T>A
  • LRG_1232p1:p.His3Gln
  • NC_000011.9:g.5248243A>T
  • P68871:p.His3Gln
Protein change:
H3Q; HIS2GLN
Links:
UniProtKB: P68871#VAR_002858; OMIM: 141900.0206; dbSNP: rs713040
NCBI 1000 Genomes Browser:
rs713040
Molecular consequence:
  • NM_000518.5:c.9T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
HEMOGLOBIN OKAYAMA
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000036797OMIM
no assertion criteria provided
other
(Dec 12, 2017)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Hemoglobin Okayama [beta 2 (NA 2) His replaced by Gln]: a new 'silent' hemoglobin variant with substituted amino acid residue at the 2,3-diphosphoglycerate binding site.

Harano T, Harano K, Shibata S, Ueda S, Mori H, Arimasa N.

FEBS Lett. 1983 May 30;156(1):20-2.

PubMed [citation]
PMID:
6852251

Details of each submission

From OMIM, SCV000036797.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

See Harano et al. (1983).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 28, 2024