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NM_000518.4(HBB):c.227T>C (p.Leu76Pro) AND HEMOGLOBIN ATLANTA-COVENTRY

Germline classification:
other (1 submission)
Last evaluated:
Dec 12, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000016255.4

Allele description [Variation Report for NM_000518.4(HBB):c.227T>C (p.Leu76Pro)]

NM_000518.4(HBB):c.227T>C (p.Leu76Pro)

Genes:
LOC106099062:HBB recombination region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.4(HBB):c.227T>C (p.Leu76Pro)
Other names:
L75P
HGVS:
  • NC_000011.10:g.5226665A>G
  • NG_000007.3:g.70951T>C
  • NG_042296.1:g.196A>G
  • NG_046672.1:g.4600A>G
  • NG_053049.1:g.2986A>G
  • NG_059281.1:g.5407T>C
  • NM_000518.5:c.227T>CMANE SELECT
  • NP_000509.1:p.Leu76Pro
  • LRG_1232t1:c.227T>C
  • LRG_1232:g.5407T>C
  • LRG_1232p1:p.Leu76Pro
  • NC_000011.9:g.5247895A>G
  • P68871:p.Leu76Pro
Note:
NCBI represents allelic variant 141900.0013 as equivalent at the nucleotide level to allelic variant 141900.0012 based on the paper by George et al., 1992 (PubMed 1520631).
Protein change:
L76P; LEU75PRO AND LEU141DEL
Links:
HBVAR: 389; UniProtKB: P68871#VAR_002976; OMIM: 141900.0012; OMIM: 141900.0013; dbSNP: rs33950542
NCBI 1000 Genomes Browser:
rs33950542
Molecular consequence:
  • NM_000518.5:c.227T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
HEMOGLOBIN ATLANTA-COVENTRY
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000036523OMIM
no assertion criteria provided
other
(Dec 12, 2017)
unknownliterature only

PubMed (3)
[See all records that cite these PMIDs]

Coleman, M. D., Adams, J. G., Steinberg, M. H. A possible somatic mutation of the human beta-globin gene. (Abstract) Blood 72 (suppl. 1): 58a, 1988.

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownnot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Two de novo mutations in one beta globin chain: hemoglobin Atlanta-Coventry, beta 75 Leu----Pro and beta 141 Leu deleted.

Brennan SO, Williamson D, Symmans WA, Carrell RW.

Hemoglobin. 1986;10(3):225-37.

PubMed [citation]
PMID:
3710819

Beta 141 Leu is not deleted in the unstable haemoglobin Atlanta-Coventry but is replaced by a novel amino acid of mass 129 daltons.

Brennan SO, Shaw J, Allen J, George PM.

Br J Haematol. 1992 May;81(1):99-103.

PubMed [citation]
PMID:
1520632
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000036523.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

Brennan et al. (1986) described a 25-year-old man with congenital hemolytic anemia who was found to have the mutation of Hb Atlanta (beta75 leu-to-pro) and that of Hb Coventry (beta141 leu deleted) in the same beta-globin chain along with a normal beta-globin chain and a beta-globin chain with only the Hb Atlanta mutation. They stated that this is the sixth known example of 2 changes in 1 beta chain. They postulated that the doubly abnormal beta-globin was a beta-delta globin originating by a Lepore-type-mechanism. Brennan et al. (1992) found on restudy that leu141 was in fact not deleted but replaced by a novel amino acid which they suggested was hydroxyleucine; they proposed that the change resulted from posttranslational oxidation of leu141 as a consequence of perturbation of the haem environment caused by the leu75-to-pro mutation. The finding was consistent with the report of George et al. (1992) who found no evidence of deletion of leu141 in genomic DNA. The heterozygous patients have 3 hemoglobins: HbA, Hb Atlanta, and Hb Atlanta-Coventry. The last 2 are the products of a single gene. A similar situation obtains with Hb Vicksburg (141900.0293), in which deletion of leu75 is not coded for in genomic DNA. Coleman et al. (1988) posited somatic mutation in that instance; however, a mechanism similar to that with Hb Atlanta-Coventry is possible.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownnot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 4, 2023