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NM_000883.4(IMPDH1):c.931G>A (p.Asp311Asn) AND Retinitis pigmentosa 10

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Apr 8, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000015959.26

Allele description [Variation Report for NM_000883.4(IMPDH1):c.931G>A (p.Asp311Asn)]

NM_000883.4(IMPDH1):c.931G>A (p.Asp311Asn)

Gene:
IMPDH1:inosine monophosphate dehydrogenase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q32.1
Genomic location:
Preferred name:
NM_000883.4(IMPDH1):c.931G>A (p.Asp311Asn)
HGVS:
  • NC_000007.14:g.128398557C>T
  • NG_009194.1:g.16426G>A
  • NM_000883.4:c.931G>AMANE SELECT
  • NM_001102605.2:c.901G>A
  • NM_001142573.2:c.676G>A
  • NM_001142574.2:c.661G>A
  • NM_001142575.2:c.601G>A
  • NM_001142576.2:c.832G>A
  • NM_001304521.2:c.724G>A
  • NM_183243.3:c.823G>A
  • NP_000874.2:p.Asp311Asn
  • NP_001096075.1:p.Asp301Asn
  • NP_001136045.1:p.Asp226Asn
  • NP_001136046.1:p.Asp221Asn
  • NP_001136047.1:p.Asp201Asn
  • NP_001136048.1:p.Asp278Asn
  • NP_001291450.1:p.Asp242Asn
  • NP_899066.1:p.Asp275Asn
  • NC_000007.13:g.128038611C>T
  • NM_000883.3:c.931G>A
Protein change:
D201N; ASP226ASN
Links:
OMIM: 146690.0001; dbSNP: rs121912550
NCBI 1000 Genomes Browser:
rs121912550
Molecular consequence:
  • NM_000883.4:c.931G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001102605.2:c.901G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142573.2:c.676G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142574.2:c.661G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142575.2:c.601G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001142576.2:c.832G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001304521.2:c.724G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_183243.3:c.823G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Retinitis pigmentosa 10 (RP10)
Identifiers:
MONDO: MONDO:0008379; MedGen: C1867299; Orphanet: 791; OMIM: 180105

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000036226OMIM
no assertion criteria provided
Pathogenic
(Jun 1, 2006)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

SCV001573294Ocular Genomics Institute, Massachusetts Eye and Ear
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Apr 8, 2021)
germlineresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineyesnot providednot providednot providednot providednot providedresearch

Citations

PubMed

Mutations in the inosine monophosphate dehydrogenase 1 gene (IMPDH1) cause the RP10 form of autosomal dominant retinitis pigmentosa.

Bowne SJ, Sullivan LS, Blanton SH, Cepko CL, Blackshaw S, Birch DG, Hughbanks-Wheaton D, Heckenlively JR, Daiger SP.

Hum Mol Genet. 2002 Mar 1;11(5):559-68.

PubMed [citation]
PMID:
11875050
PMCID:
PMC2585828

Screen of the IMPDH1 gene among patients with dominant retinitis pigmentosa and clinical features associated with the most common mutation, Asp226Asn.

Wada Y, Sandberg MA, McGee TL, Stillberger MA, Berson EL, Dryja TP.

Invest Ophthalmol Vis Sci. 2005 May;46(5):1735-41.

PubMed [citation]
PMID:
15851576
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000036226.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

Among 3 families with autosomal dominant retinitis pigmentosa linked to 7q (RP10; 180105), Bowne et al. (2002) identified a G-to-A transition at codon 226 of the IMPDH1 gene, substituting an asparagine for an aspartic acid (D226N). Asp226 is highly evolutionarily conserved among IMPDH genes, suggesting that this mutation may be highly deleterious.

Wada et al. (2005) identified the D226N mutation in 6 of 183 unrelated patients with autosomal dominant RP. Taking into account the 135 patients excluded from the study because of previously identified mutations in other dominant RP genes, Wada et al. (2005) estimated that IMPDH1 mutations account for approximately 2% of cases of dominant RP in North America. Based on a comparison of electroretinogram (ERG) amplitudes among carriers of the IMPDH1 D226N mutation, the RP1 mutation R677X (603937.0001), the rhodopsin mutation P23H (180380.0001), and the rhodopsin mutation P347L (180380.0002), Wada et al. (2005) concluded that D226N, the most frequent mutation, appeared to cause at least as much loss of rod function as cone function, and that patients with this form of RP retained, on average, 2 to 5 times more ERG amplitude per unit of remaining visual area than patients with the 3 other forms of dominant RP.

Bischof et al. (2006) identified a processed pseudogene for IMPDH1 carrying the 676G-A transition that produces the D226N substitution. The authors suggested that this case may represent a novel gene conversion event involving a processed pseudogene.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Ocular Genomics Institute, Massachusetts Eye and Ear, SCV001573294.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (1)

Description

The IMPDH1 c.931G>A variant was identified in an individual with retinitis pigmentosa with a presumed dominant inheritance pattern. Through a review of available evidence we were able to apply the following criteria: PM2, PS3, PP1-S. Based on this evidence we have classified this variant as Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024