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NM_170707.4(LMNA):c.1718C>T (p.Ser573Leu) AND Dilated cardiomyopathy 1A

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Feb 1, 2007
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000015612.31

Allele description [Variation Report for NM_170707.4(LMNA):c.1718C>T (p.Ser573Leu)]

NM_170707.4(LMNA):c.1718C>T (p.Ser573Leu)

Gene:
LMNA:lamin A/C [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q22
Genomic location:
Preferred name:
NM_170707.4(LMNA):c.1718C>T (p.Ser573Leu)
Other names:
chr1-156138507-C-T
HGVS:
  • NC_000001.11:g.156138507C>T
  • NG_008692.2:g.60935C>T
  • NM_001257374.3:c.1382C>T
  • NM_001282626.2:c.1718C>T
  • NM_170707.4:c.1718C>TMANE SELECT
  • NM_170708.4:c.1628C>T
  • NP_001244303.1:p.Ser461Leu
  • NP_001269555.1:p.Ser573Leu
  • NP_733821.1:p.Ser573Leu
  • NP_733822.1:p.Ser543Leu
  • LRG_254t2:c.1718C>T
  • LRG_254:g.60935C>T
  • NC_000001.10:g.156108298C>T
  • NM_170707.2:c.1718C>T
  • NM_170707.3(LMNA):c.1718C>T
  • NM_170707.3:c.1718C>T
  • P02545:p.Ser573Leu
  • c.1718C>T
Protein change:
S461L; SER573LEU
Links:
UniProtKB: P02545#VAR_039789; OMIM: 150330.0041; dbSNP: rs60890628
NCBI 1000 Genomes Browser:
rs60890628
Molecular consequence:
  • NM_001257374.3:c.1382C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282626.2:c.1718C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170707.4:c.1718C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170708.4:c.1628C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Dilated cardiomyopathy 1A (CMD1A)
Synonyms:
CARDIOMYOPATHY, CONGESTIVE; CARDIOMYOPATHY, DILATED, WITH CONDUCTION DEFECT 1; Idiopathic dilated cardiomyopathy; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007269; MedGen: C1449563; Orphanet: 300751; OMIM: 115200

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000035877OMIM
no assertion criteria provided
Pathogenic
(Feb 1, 2007)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedunknownunknown1not providednot providednot providednot providedresearch

Citations

PubMed

Natural history of dilated cardiomyopathy due to lamin A/C gene mutations.

Taylor MR, Fain PR, Sinagra G, Robinson ML, Robertson AD, Carniel E, Di Lenarda A, Bohlmeyer TJ, Ferguson DA, Brodsky GL, Boucek MM, Lascor J, Moss AC, Li WL, Stetler GL, Muntoni F, Bristow MR, Mestroni L; Familial Dilated Cardiomyopathy Registry Research Group..

J Am Coll Cardiol. 2003 Mar 5;41(5):771-80. Erratum in: J Am Coll Cardiol. 2003 Aug 6;42(3):590.

PubMed [citation]
PMID:
12628721

A homozygous mutation in the lamin A/C gene associated with a novel syndrome of arthropathy, tendinous calcinosis, and progeroid features.

Van Esch H, Agarwal AK, Debeer P, Fryns JP, Garg A.

J Clin Endocrinol Metab. 2006 Feb;91(2):517-21. Epub 2005 Nov 8.

PubMed [citation]
PMID:
16278265
See all PubMed Citations (5)

Details of each submission

From OMIM, SCV000035877.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In a 50-year-old Italian woman with sporadic dilated cardiomyopathy with conduction defects (CMD1A; 115200), Taylor et al. (2003) identified heterozygosity for a 1718C-T transition in exon 11 of the LMNA gene, resulting in a ser573-to-leu substitution at a highly conserved residue, predicted to affect the carboxyl tail of the lamin A isoform. The mutation was not found in the proband's 2 unaffected offspring or in 300 control chromosomes, but her unaffected 60-year-old sister also carried the mutation.

Van Esch et al. (2006) analyzed the LMNA gene in a 44-year-old male of European descent with arthropathy, tendinous calcifications, and a progeroid appearance (see 248370) and identified homozygosity for the S573L mutation. Progeroid features included a small pinched nose, small lips, micrognathia with crowded teeth, cataract, and alopecia. He also had generalized lipodystrophy, and sclerodermatous skin. The arthropathy affected predominantly the distal femora and proximal tibia in the knee with tendinous calcifications. However, he had normal clavicles and no evidence of acroosteolysis. The authors concluded that he had a novel phenotype. The patient's unaffected 15-year-old son was heterozygous for the mutation, which was not found in 450 control chromosomes. The authors noted that the patient had no evidence of cardiomyopathy and his 70-year-old mother, an obligate heterozygote, had no known cardiac problems.

In a 75-year-old European male with partial lipodystrophy (FPLD2; 151660), Lanktree et al. (2007) identified heterozygosity for the S573L mutation in the LMNA gene.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Laan Lab, Human Genetics Research Group, University of Tartu, SCV002538608.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot provided1not providednot providednot provided

Flagged submissions

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002538608Laan Lab, Human Genetics Research Group, University of Tartu
flagged submission
Reason: Outlier claim with insufficient supporting evidence
Notes: None

(ACMG Guidelines, 2015)
Likely pathogenic
(May 1, 2021)
unknownresearch

PubMed (2)
[See all records that cite these PMIDs]

Last Updated: Oct 20, 2024