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NM_000257.4(MYH7):c.1208G>A (p.Arg403Gln) AND Hypertrophic cardiomyopathy 1

Germline classification:
Pathogenic (3 submissions)
Last evaluated:
Aug 1, 2017
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000015143.30

Allele description [Variation Report for NM_000257.4(MYH7):c.1208G>A (p.Arg403Gln)]

NM_000257.4(MYH7):c.1208G>A (p.Arg403Gln)

Gene:
MYH7:myosin heavy chain 7 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q11.2
Genomic location:
Preferred name:
NM_000257.4(MYH7):c.1208G>A (p.Arg403Gln)
Other names:
p.R403Q:CGG>CAG; NM_000257.3(MYH7):c.1208G>A
HGVS:
  • NC_000014.9:g.23429278C>T
  • NG_007884.1:g.11384G>A
  • NM_000257.4:c.1208G>AMANE SELECT
  • NP_000248.2:p.Arg403Gln
  • LRG_384t1:c.1208G>A
  • LRG_384:g.11384G>A
  • NC_000014.8:g.23898487C>T
  • NM_000257.2:c.1208G>A
  • NM_000257.3:c.1208G>A
  • P12883:p.Arg403Gln
  • c.1208G>A
Protein change:
R403Q; ARG403GLN
Links:
UniProtKB: P12883#VAR_004574; OMIM: 160760.0001; dbSNP: rs121913624
NCBI 1000 Genomes Browser:
rs121913624
Molecular consequence:
  • NM_000257.4:c.1208G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Hypertrophic cardiomyopathy 1
Synonyms:
Familial hypertrophic cardiomyopathy 1; MYH7-Related Familial Hypertrophic Cardiomyopathy
Identifiers:
MONDO: MONDO:0008647; MedGen: C3495498; OMIM: 192600

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000035400OMIM
no assertion criteria provided
Pathogenic
(Jan 1, 2003)
germlineliterature only

PubMed (9)
[See all records that cite these PMIDs]

SCV000679780Phosphorus, Inc.
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Aug 1, 2017)
germlineclinical testing

PubMed (40)
[See all records that cite these PMIDs]

SCV000692503Agnes Ginges Centre for Molecular Cardiology, Centenary Institute
criteria provided, single submitter

(Agnes Ginges Centre for Molecular Cardiology criteria (2015))
Pathogenic
(Mar 13, 2017)
germlineresearch

PubMed (40)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineyesnot providednot providednot providednot providednot providedresearch
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Citations

PubMed

The complete sequence of the human beta-myosin heavy chain gene and a comparative analysis of its product.

Jaenicke T, Diederich KW, Haas W, Schleich J, Lichter P, Pfordt M, Bach A, Vosberg HP.

Genomics. 1990 Oct;8(2):194-206.

PubMed [citation]
PMID:
2249844

DD genotype of the angiotensin-converting enzyme gene is a risk factor for left ventricular hypertrophy.

Iwai N, Ohmichi N, Nakamura Y, Kinoshita M.

Circulation. 1994 Dec;90(6):2622-8.

PubMed [citation]
PMID:
7994801
See all PubMed Citations (54)

Details of each submission

From OMIM, SCV000035400.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (9)

Description

In the large French-Canadian kindred originally reported by Pare et al. (1961) and shown to have linkage of the cardiac disorder (CMH1; 192600) to markers on the proximal portion of 14q, Geisterfer-Lowrance et al. (1990) found a missense mutation in the beta cardiac myosin heavy chain that converted arginine-403 to glutamine (R403Q). A guanine residue at position 10,162 (enumerated as in Jaenicke et al., 1990) was mutated to an adenine residue. The mutation generated a new DdeI site and changed the CGG(arg) codon to CAG(gln). Perryman et al. (1992) found that the R403Q mutation was identifiable in myocardial mRNA. Ross and Knowlton (1992) reviewed this discovery beginning with the patients first seen by Pare in the 1950s.

Using an isolated, isovolumic heart preparation where cardiac performance was measured simultaneously with cardiac energetics using (31)P nuclear magnetic resonance spectroscopy, Spindler et al. (1998) studied the effects of the codon 403 missense mutation. They observed 3 major alterations in the physiology and bioenergetics of the mutant mouse hearts. First, while there was no evidence for systolic dysfunction, diastolic function was impaired during inotropic stimulation. Diastolic dysfunction was manifest as both a decreased rate of left ventricular relaxation and an increase in end-diastolic pressure. Second, under baseline conditions the mutant R403Q mouse hearts had lower phosphocreatine and increased inorganic phosphate contents resulting in a decrease in the calculated value for the free energy released from ATP hydrolysis. Third, mutant hearts that were studied unpaced responded to increased perfusate calcium by decreasing heart rate approximately twice as much as wildtypes. The authors concluded that the hearts from mice carrying the R403Q mutation have workload-dependent diastolic dysfunction resembling the human form of familial hypertrophic cardiomyopathy. Changes in high-energy phosphate content suggested that an energy-requiring process may contribute to the observed diastolic dysfunction.

Bashyam et al. (2003) pointed out that polymorphism in the ACE1 gene (106180) had been shown to affect the prognosis in familial hypertrophic cardiomyopathy. The DD allele of the ACE1 gene (106180.0001) was associated with a severe form of hypertrophy and sudden death in patients with familial hypertrophic cardiomyopathy (Iwai et al., 1994). Tesson et al. (1997) established an association of the D allele at the ACE1 locus with the R403Q mutation in MYH7, but not with MYBPC3 (600958) mutations.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Phosphorus, Inc., SCV000679780.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (40)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

From Agnes Ginges Centre for Molecular Cardiology, Centenary Institute, SCV000692503.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (40)

Description

The MYH7 Arg403Gln variant has been reported in numerous HCM cases (see literature). This variant is known to have high penetrance and has been described to segregate with disease in multiple large families (Geisterfer-Lowrance AA, et al., 1990; Epstein ND, et al., 1992; Marian AJ, et al.,1995; Richard P, et al., 2003; Woo A, et al., 2003; Millat G, et al., 2010). Many functional studies have been carried out which strongly support the pathogenicity of the variant and its affect on the function of cardiomyocytes (see literature). The variant is absent from the Exome Aggregation Consortium dataset (http://exac.broadinstitute.org/) and 1000 genomes project (http://www.1000genomes.org/). We identified this variant in an HCM proband, and 1 other affected family member. In silico tools SIFT, PolyPhen-2 and MutationTaster are all supportive of a deleterious role. Furthermore another pathogenic variant has been reported at the same amino acid position (Arg403Trp), suggesting that an amino acid substitution at this residue is not tolerant to change. In summary, based on multiple reported cases, strong segregation data in literature, functional data supportive of pathogenicity and an additional pathogenic variant at the same residue, we classify MYH7 Arg403Gln as a "pathogenic" variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024