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NM_003126.4(SPTA1):c.620T>C (p.Leu207Pro) AND Elliptocytosis 2

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 15, 2005
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000013715.31

Allele description [Variation Report for NM_003126.4(SPTA1):c.620T>C (p.Leu207Pro)]

NM_003126.4(SPTA1):c.620T>C (p.Leu207Pro)

Gene:
SPTA1:spectrin alpha, erythrocytic 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q23.1
Genomic location:
Preferred name:
NM_003126.4(SPTA1):c.620T>C (p.Leu207Pro)
HGVS:
  • NC_000001.11:g.158680641A>G
  • NG_011474.1:g.11076T>C
  • NM_003126.4:c.620T>CMANE SELECT
  • NP_003117.2:p.Leu207Pro
  • LRG_1131:g.11076T>C
  • NC_000001.10:g.158650431A>G
  • NM_003126.2:c.620T>C
  • P02549:p.Leu207Pro
Protein change:
L207P; LEU207PRO
Links:
UniProtKB: P02549#VAR_001339; OMIM: 182860.0016; dbSNP: rs121918643
NCBI 1000 Genomes Browser:
rs121918643
Molecular consequence:
  • NM_003126.4:c.620T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Elliptocytosis 2 (EL2)
Synonyms:
ELLIPTOCYTOSIS, RHESUS-UNLINKED TYPE
Identifiers:
MONDO: MONDO:0007533; MedGen: C1851741; Orphanet: 288; OMIM: 130600

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000033962OMIM
no assertion criteria provided
Pathogenic
(Dec 15, 2005)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A common type of the spectrin alpha I 46-50a-kD peptide abnormality in hereditary elliptocytosis and pyropoikilocytosis is associated with a mutation distant from the proteolytic cleavage site. Evidence for the functional importance of the triple helical model of spectrin.

Gallagher PG, Tse WT, Coetzer T, Lecomte MC, Garbarz M, Zarkowsky HS, Baruchel A, Ballas SK, Dhermy D, Palek J, et al.

J Clin Invest. 1992 Mar;89(3):892-8.

PubMed [citation]
PMID:
1541680
PMCID:
PMC442935

An alpha-spectrin mutation responsible for hereditary elliptocytosis associated in cis with the alpha v/41 polymorphism.

Dalla Venezia N, Wilmotte R, Morlé L, Forissier A, Parquet N, Garbarz M, Rousset T, Dhermy D, Alloisio N, Delaunay J.

Hum Genet. 1993 Feb;90(6):641-4.

PubMed [citation]
PMID:
8444470
See all PubMed Citations (4)

Details of each submission

From OMIM, SCV000033962.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

In 9 individuals from 5 unrelated families with hereditary elliptocytosis (EL2; 130600) or hereditary pyropoikilocytosis (HPP; 266140), including one of the original HPP probands reported by Zarkowsky et al. (1975), Gallagher et al. (1992) found the alpha-I/46-50a peptide after limited tryptic digestion of spectrin. Further studies identified a point mutation causing the replacement of a highly conserved leucine residue by proline at position 207 in the alpha-spectrin chain, a site 51 residues to the amino-terminal side of the abnormal proteolytic cleavage site. Dalla Venezia et al. (1993) found the leu207-to-pro mutation in a Moroccan family in both homozygous and heterozygous states. The mutated allele carried, in cis, the common alpha-V/41 polymorphism, which is associated with a low expression level. Dalla Venezia et al. (1993) suggested that the cis combination of an HE mutation and the alpha-V/41 polymorphism accounts for the low expression of the abnormal allele in the heterozygous state.

In the original family of Zarkowsky et al. (1975), the L207P mutation was in compound heterozygous state with an SPTA1 allele associated with a defect in alpha-spectrin production. By analysis of reticulocyte alpha-spectrin cDNA from 1 of the original HPP patients, Costa et al. (2005) identified a G-to-A transition (182860.0024) at position +5 of the donor splice site of intron 22 of the SPTA1 gene, resulting in insertion of intronic fragments and an in-frame premature termination codon. Following gene transfer of the IVS22+5 mutation into tissue culture cells, there was complete absence of normally spliced SPTA1 gene transcript.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024