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NM_004959.5(NR5A1):c.18del (p.Asp6fs) AND 46,XY sex reversal 3

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 1, 2004
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000013643.20

Allele description [Variation Report for NM_004959.5(NR5A1):c.18del (p.Asp6fs)]

NM_004959.5(NR5A1):c.18del (p.Asp6fs)

Gene:
NR5A1:nuclear receptor subfamily 5 group A member 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
9q33.3
Genomic location:
Preferred name:
NM_004959.5(NR5A1):c.18del (p.Asp6fs)
HGVS:
  • NC_000009.12:g.124503378del
  • NG_008176.1:g.9043del
  • NG_051350.1:g.11del
  • NM_004959.5:c.18delMANE SELECT
  • NP_004950.2:p.Asp6fs
  • NC_000009.11:g.127265657del
  • NM_004959.4:c.18del
Protein change:
D6fs
Links:
OMIM: 184757.0006; dbSNP: rs606231205
NCBI 1000 Genomes Browser:
rs606231205
Molecular consequence:
  • NM_004959.5:c.18del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
46,XY sex reversal 3
Synonyms:
SEX REVERSAL, XY, WITH OR WITHOUT ADRENAL FAILURE; 46,XY SEX REVERSAL, PARTIAL OR COMPLETE, NR5A1-RELATED; NR5A1-Related 46,XY CGD; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0013066; MedGen: C3489793; OMIM: 612965

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000033890OMIM
no assertion criteria provided
Pathogenic
(Dec 1, 2004)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Testicular dysgenesis without adrenal insufficiency in a 46,XY patient with a heterozygous inactive mutation of steroidogenic factor-1.

Hasegawa T, Fukami M, Sato N, Katsumata N, Sasaki G, Fukutani K, Morohashi K, Ogata T.

J Clin Endocrinol Metab. 2004 Dec;89(12):5930-5. Review.

PubMed [citation]
PMID:
15579739

Details of each submission

From OMIM, SCV000033890.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

Hasegawa et al. (2004) identified an SF1 mutation in a 27-year-old Japanese patient with a 46,XY karyotype and complete gonadal dysgenesis (SRXY3; 612965). Sequence analysis of all 7 exons of SF1 revealed a heterozygous 1-bp deletion at exon 2, 18delC, that was predicted to cause a frameshift at codon 6 and result in termination at codon 74 (Asp6fsTer74). Western blot analysis demonstrated no evidence of an amino-truncated SF1 protein despite the 18delC mutation being very close to the natural translation start codon. Transcription analysis indicated that the mutant was transcriptionally inactive and had no dominant-negative effect. Clinical features included small dysgenetic testes with vasa deferentia and epididymides, absent uterus, blind-ending vagina, and clitoromegaly. The authors concluded that SF1 haploinsufficiency can selectively impair testicular development and permit the biosynthesis of AMH (600957) and testosterone in dysgenetic testes and the production of gonadotropins in pituitary gonadotropes.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022