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NM_000367.2(TPMT):c.238G>C (p.Ala80Pro) AND Thiopurine S-methyltransferase deficiency

Germline classification:
drug response (1 submission)
Last evaluated:
Feb 1, 1999
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000013558.12

Allele description [Variation Report for NM_000367.2(TPMT):c.238G>C (p.Ala80Pro)]

NM_000367.2(TPMT):c.238G>C (p.Ala80Pro)

Gene:
TPMT:thiopurine S-methyltransferase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p22.3
Genomic location:
Preferred name:
NM_000367.2(TPMT):c.238G>C (p.Ala80Pro)
Other names:
TPMT*2
HGVS:
  • NC_000006.12:g.18143724C>G
  • NG_012137.3:g.16420G>C
  • NM_000367.5:c.238G>CMANE SELECT
  • NM_001346817.1:c.238G>C
  • NM_001346818.1:c.238G>C
  • NP_000358.1:p.Ala80Pro
  • NP_001333746.1:p.Ala80Pro
  • NP_001333747.1:p.Ala80Pro
  • LRG_874t1:c.238G>C
  • LRG_874:g.16420G>C
  • LRG_874p1:p.Ala80Pro
  • NC_000006.11:g.18143955C>G
  • NG_012137.2:g.16420G>C
  • NM_000367.2:c.238G>C
  • P51580:p.Ala80Pro
Nucleotide change:
238G>C
Protein change:
A80P; ALA80PRO
Links:
Genetic Testing Registry (GTR): GTR000613302; UniProtKB: P51580#VAR_005637; OMIM: 187680.0001; dbSNP: rs1800462
NCBI 1000 Genomes Browser:
rs1800462
Molecular consequence:
  • NM_000367.5:c.238G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001346817.1:c.238G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001346818.1:c.238G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Thiopurine S-methyltransferase deficiency
Synonyms:
Thiopurine S methyltranferase deficiency; TPMT deficiency; THIOPURINES, POOR METABOLISM OF, 1
Identifiers:
MONDO: MONDO:0012503; MedGen: C0342801; OMIM: 610460

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000033805OMIM
no assertion criteria provided
drug response
(Feb 1, 1999)
germlineliterature only

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Thiopurine S-methyltransferase deficiency: two nucleotide transitions define the most prevalent mutant allele associated with loss of catalytic activity in Caucasians.

Tai HL, Krynetski EY, Yates CR, Loennechen T, Fessing MY, Krynetskaia NF, Evans WE.

Am J Hum Genet. 1996 Apr;58(4):694-702.

PubMed [citation]
PMID:
8644731
PMCID:
PMC1914689

Altered mercaptopurine metabolism, toxic effects, and dosage requirement in a thiopurine methyltransferase-deficient child with acute lymphocytic leukemia.

Evans WE, Horner M, Chu YQ, Kalwinsky D, Roberts WM.

J Pediatr. 1991 Dec;119(6):985-9.

PubMed [citation]
PMID:
1960624
See all PubMed Citations (5)

Details of each submission

From OMIM, SCV000033805.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (5)

Description

This TPMT variant is referred to as the TPMT*2 allele (Tai et al., 1996).

In an 8-year-old girl with thiopurine S-methyltransferase deficiency (THPM1; 610460) originally reported by Evans et al. (1991), Krynetski et al. (1995) identified a 238G-C transversion in the TPMT gene, resulting in an ala80-to-pro (A80P) substitution. The patient developed severe hematologic toxicity after conventional therapy for acute lymphoblastic leukemia with oral mercaptopurine. Functional expression studies in a yeast heterologous expression system showed that the A80P mutant enzyme had a 100-fold reduction in TPMT catalytic activity compared to the wildtype enzyme, despite a comparable level of mRNA expression. A mutation-specific PCR amplification method was developed and used to detect the same mutation in genomic DNA of the proposita and her mother. Krynetski et al. (1995) concluded that the patient had a second inactivating mutation.

Tai et al. (1997) showed that the TPMT*2 and TPMT*3A (187680.0002) mutant proteins showed enhanced degradation, thus resulting in decreased TPMT protein and catalytic activity.

Ameyaw et al. (1999) identified the TPMT*2 allele in 2 of 199 British Caucasian individuals (allele frequency of 0.5%) and none of 217 Ghanaian individuals, suggesting that it is restricted to the Caucasian population.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024