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NM_000133.4(F9):c.677G>A (p.Arg226Gln) AND Hemophilia b(m)

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jul 1, 1993
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000011337.8

Allele description [Variation Report for NM_000133.4(F9):c.677G>A (p.Arg226Gln)]

NM_000133.4(F9):c.677G>A (p.Arg226Gln)

Gene:
F9:coagulation factor IX [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq27.1
Genomic location:
Preferred name:
NM_000133.4(F9):c.677G>A (p.Arg226Gln)
Other names:
F9, ARG180GLN; R180Q
HGVS:
  • NC_000023.11:g.139551218G>A
  • NG_007994.1:g.25483G>A
  • NM_000133.4:c.677G>AMANE SELECT
  • NM_001313913.2:c.563G>A
  • NP_000124.1:p.Arg226Gln
  • NP_000124.1:p.Arg226Gln
  • NP_001300842.1:p.Arg188Gln
  • LRG_556t1:c.677G>A
  • LRG_556:g.25483G>A
  • LRG_556p1:p.Arg226Gln
  • NC_000023.10:g.138633377G>A
  • NM_000133.3:c.677G>A
  • P00740:p.Arg226Gln
Protein change:
R188Q; ARG180GLN
Links:
UniProtKB: P00740#VAR_006572; OMIM: 300746.0031; dbSNP: rs137852241
NCBI 1000 Genomes Browser:
rs137852241
Molecular consequence:
  • NM_000133.4:c.677G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001313913.2:c.563G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hemophilia b(m)
Identifiers:
MedGen: CN043453

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000031568OMIM
no assertion criteria provided
Pathogenic
(Jul 1, 1993)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Molecular defect in factor IXHilo, a hemophilia Bm variant: Arg----Gln at the carboxyterminal cleavage site of the activation peptide.

Huang MN, Kasper CK, Roberts HR, Stafford DW, High KA.

Blood. 1989 Feb 15;73(3):718-21.

PubMed [citation]
PMID:
2563663

The abnormal factor IX of hemophilia B+ variants.

Bertina RM, Veltkamp JJ.

Thromb Haemost. 1978 Oct 31;40(2):335-49.

PubMed [citation]
PMID:
734633
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000031568.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

This variant has been called factor IX Hilo and factor IX Novara.

A subset of hemophilia B patients have a prolonged prothrombin time (PT) when exposed to bovine (or ox) brain tissue; these CRM+ patients are classified as having hemophilia B(M) (see 306900). Huang et al. (1989) demonstrated a point mutation in a hemophilia B(M) variant, factor IX Hilo. Glutamine (CAG) was substituted for arginine (CGG) at amino acid 180 in exon 6 (G-to-A at nucleotide 20519). Bertina et al. (1990) found the same mutation. The hemophilia was clinically severe.

Lefkowitz et al. (1993) noted that the bovine brain tissue in studies of hemophilia B(M) is the source of thromboplastin, or tissue factor (F3; 134390); PT times determined with thromboplastin from rabbit brain or human brain are not reported to be prolonged. However, in various studies of factor IX Hilo, Lefkowitz et al. (1993) found that either normal F9 or Hilo F9 prolonged the PT regardless of the tissue factor source, but the prolongation required high concentrations of factor IX when rabbit or human brain was used. With bovine thromboplastin, factor IX Hilo was significantly better than normal factor IX at prolonging the PT. In addition, the prolongation times depended on the amounts of factors IX and X used in the assays.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022