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NM_002049.4(GATA1):c.652G>T (p.Asp218Tyr) AND Thrombocytopenia, X-linked, with dyserythropoietic anemia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 15, 2002
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000011172.12

Allele description [Variation Report for NM_002049.4(GATA1):c.652G>T (p.Asp218Tyr)]

NM_002049.4(GATA1):c.652G>T (p.Asp218Tyr)

Gene:
GATA1:GATA binding protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xp11.23
Genomic location:
Preferred name:
NM_002049.4(GATA1):c.652G>T (p.Asp218Tyr)
Other names:
D218Y
HGVS:
  • NC_000023.11:g.48792376G>T
  • NG_008846.2:g.10803G>T
  • NM_002049.4:c.652G>TMANE SELECT
  • NP_002040.1:p.Asp218Tyr
  • LRG_559t1:c.652G>T
  • LRG_559:g.10803G>T
  • LRG_559p1:p.Asp218Tyr
  • NC_000023.10:g.48650783G>T
  • NM_002049.3:c.652G>T
  • P15976:p.Asp218Tyr
Protein change:
ASP218TYR
Links:
UniProtKB: P15976#VAR_033115; OMIM: 305371.0005; dbSNP: rs104894808
NCBI 1000 Genomes Browser:
rs104894808
Molecular consequence:
  • NM_002049.4:c.652G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Thrombocytopenia, X-linked, with dyserythropoietic anemia
Identifiers:
MedGen: C4016507

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000031399OMIM
no assertion criteria provided
Pathogenic
(Jan 15, 2002)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Different substitutions at residue D218 of the X-linked transcription factor GATA1 lead to altered clinical severity of macrothrombocytopenia and anemia and are associated with variable skewed X inactivation.

Freson K, Matthijs G, Thys C, Mariƫn P, Hoylaerts MF, Vermylen J, Van Geet C.

Hum Mol Genet. 2002 Jan 15;11(2):147-52.

PubMed [citation]
PMID:
11809723

Details of each submission

From OMIM, SCV000031399.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

Freson et al. (2002) described a 2-generation family with X-linked thrombocytopenia and anemia (300367) in which affected individuals had a 652G-T transversion in the GATA1 gene, resulting in an asp218-to-tyr (D218Y) substitution. Zinc finger interaction studies revealed a stronger loss of affinity of D218Y-GATA1 than of D218G-GATA1 (305371.0002) for the essential transcription factor FOG1 (601950) and a disturbed GATA1 self-association. Comparison of the phenotypic characteristics of patients from both families revealed that platelet and erythrocyte morphology as well as expression levels of the platelet GATA1-target gene products were more profoundly disturbed for the hemizygote D218Y mutation. The D218Y allele (as opposed to the D218G allele) was not expressed in the platelets of a female carrier, while her leukocytes showed a skewed X-inactivation pattern. The authors concluded that the nature of the amino acid substitution at position 218 of the N-terminal zinc finger of GATA1 may be of crucial importance in determining the severity of the phenotype in X-linked macrothrombocytopenia patients and possibly also in inducing skewed X inactivation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024