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NM_001034853.2(RPGR):c.2929G>T (p.Gly977Ter) AND X-linked cone-rod dystrophy 1

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 1, 2005
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000010596.5

Allele description [Variation Report for NM_001034853.2(RPGR):c.2929G>T (p.Gly977Ter)]

NM_001034853.2(RPGR):c.2929G>T (p.Gly977Ter)

Gene:
RPGR:retinitis pigmentosa GTPase regulator [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xp11.4
Genomic location:
Preferred name:
NM_001034853.2(RPGR):c.2929G>T (p.Gly977Ter)
Other names:
G392*
HGVS:
  • NC_000023.11:g.38286070C>A
  • NG_009553.1:g.46466G>T
  • NM_000328.3:c.1905+1024G>T
  • NM_001034853.2:c.2929G>TMANE SELECT
  • NM_001367245.1:c.1902+1024G>T
  • NM_001367246.1:c.1719+1024G>T
  • NM_001367247.1:c.1572+4889G>T
  • NM_001367248.1:c.1602+4889G>T
  • NM_001367249.1:c.1569+4889G>T
  • NM_001367250.1:c.1569+4889G>T
  • NM_001367251.1:c.1386+4889G>T
  • NP_001030025.1:p.Gly977Ter
  • NC_000023.10:g.38145323C>A
Protein change:
G977*; GLY392TER
Links:
OMIM: 312610.0022; dbSNP: rs137852551
NCBI 1000 Genomes Browser:
rs137852551
Molecular consequence:
  • NM_000328.3:c.1905+1024G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367245.1:c.1902+1024G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367246.1:c.1719+1024G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367247.1:c.1572+4889G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367248.1:c.1602+4889G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367249.1:c.1569+4889G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367250.1:c.1569+4889G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367251.1:c.1386+4889G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001034853.2:c.2929G>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
X-linked cone-rod dystrophy 1 (CORDX1)
Identifiers:
MONDO: MONDO:0010566; MedGen: C1844776; Orphanet: 1872; OMIM: 304020

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000030822OMIM
no assertion criteria provided
Pathogenic
(Jun 1, 2005)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Identification of novel RPGR ORF15 mutations in X-linked progressive cone-rod dystrophy (XLCORD) families.

Ebenezer ND, Michaelides M, Jenkins SA, Audo I, Webster AR, Cheetham ME, Stockman A, Maher ER, Ainsworth JR, Yates JR, Bradshaw K, Holder GE, Moore AT, Hardcastle AJ.

Invest Ophthalmol Vis Sci. 2005 Jun;46(6):1891-8.

PubMed [citation]
PMID:
15914600

Details of each submission

From OMIM, SCV000030822.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a family with X-linked cone-rod dystrophy (304020), Ebenezer et al. (2005) identified a G-to-T transversion at nucleotide 1176 of the ORF15 exon of the RPGR gene that resulted in a gly392-to-ter (G392X) substitution.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 5, 2023