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NC_012920.1(MT-TM):m.4409T>C AND Inborn mitochondrial myopathy

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 5, 2008
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000010191.3

Allele description [Variation Report for NC_012920.1(MT-TM):m.4409T>C]

NC_012920.1(MT-TM):m.4409T>C

Gene:
MT-TM:mitochondrially encoded tRNA methionine [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Genomic location:
Preferred name:
NC_012920.1(MT-TM):m.4409T>C
HGVS:
NC_012920.1:m.4409T>C
Nucleotide change:
4409T-C
Links:
OMIM: 590065.0001; dbSNP: rs118203884
NCBI 1000 Genomes Browser:
rs118203884

Condition(s)

Name:
Inborn mitochondrial myopathy
Synonyms:
Mitochondrial myopathy; Mitochondrial Myopathies
Identifiers:
MONDO: MONDO:0009637; MedGen: C0162670; Human Phenotype Ontology: HP:0003737

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000030414OMIM
no assertion criteria provided
Pathogenic
(Dec 5, 2008)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A new mitochondrial tRNA(Met) gene mutation in a patient with dystrophic muscle and exercise intolerance.

Vissing J, Salamon MB, Arlien-Søborg P, Nørby S, Manta P, DiMauro S, Schmalbruch H.

Neurology. 1998 Jun;50(6):1875-8.

PubMed [citation]
PMID:
9633749

A disease-causing point mutation in human mitochondrial tRNAMet rsults in tRNA misfolding leading to defects in translational initiation and elongation.

Jones CN, Jones CI, Graham WD, Agris PF, Spremulli LL.

J Biol Chem. 2008 Dec 5;283(49):34445-56. doi: 10.1074/jbc.M806992200. Epub 2008 Oct 3.

PubMed [citation]
PMID:
18835817
PMCID:
PMC2590712

Details of each submission

From OMIM, SCV000030414.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

Vissing et al. (1998) identified a heteroplasmic 4409T-C transition in the MTTM gene in a 30-year-old woman with growth retardation, muscle weakness, severe exercise intolerance since age 10 years, and lactic acidosis. Other features included decreased IQ (verbal, 81; performance, 82) and diffuse muscle atrophy. Muscle biopsy showed unusually severe dystrophic features with internal nuclei, variation in fiber type, and ragged red fibers. Electron microscopy showed giant mitochondria with abnormal cristae structure and crystalloid inclusions. There was 77% mutation load in muscle and 8% in leukocytes; presence of the mutation in muscle correlated with decreased oxidative capacity. The mutation was not present in maternal relatives or 25 healthy subjects.

Jones et al. (2008) found that the 4409T-C transition results in a drastic disruption of the structure of the tRNA-Met, causing loss of stable structure at physiologic temperatures and improper folding. This significantly reduces its aminoacylation. The small fraction of tRNA-Met that can be aminoacylated is not formylated by the mitochondrial Met-tRNA transformylase (MTFMT; 611766), preventing its function in initiation. It is also unable to form a stable ternary complex with elongation factor EF-Tu (TUFM; 602389), preventing any participation in chain elongation. Further studies indicated that the 4409T-C mutation disrupts a critical Mg(2+)-binding site on the tRNA required for formation of the biologically active structure.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 23, 2024