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NM_002181.4(IHH):c.298G>A (p.Asp100Asn) AND Brachydactyly type A1

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 1, 2009
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000009419.7

Allele description [Variation Report for NM_002181.4(IHH):c.298G>A (p.Asp100Asn)]

NM_002181.4(IHH):c.298G>A (p.Asp100Asn)

Gene:
IHH:Indian hedgehog signaling molecule [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q35
Genomic location:
Preferred name:
NM_002181.4(IHH):c.298G>A (p.Asp100Asn)
HGVS:
  • NC_000002.12:g.219060170C>T
  • NG_016741.1:g.5347G>A
  • NM_002181.4:c.298G>AMANE SELECT
  • NP_002172.2:p.Asp100Asn
  • NC_000002.11:g.219924892C>T
  • NM_002181.3:c.298G>A
  • Q14623:p.Asp100Asn
Protein change:
D100N; ASP100ASN
Links:
UniProtKB: Q14623#VAR_015984; OMIM: 600726.0004; dbSNP: rs121917855
NCBI 1000 Genomes Browser:
rs121917855
Molecular consequence:
  • NM_002181.4:c.298G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Brachydactyly type A1
Synonyms:
Brachydactyly Farabee type; SHORT STATURE WITH NONSPECIFIC SKELETAL ABNORMALITIES 2
Identifiers:
MONDO: MONDO:0007215; MedGen: C1862151; Orphanet: 93388; OMIM: 112500; Human Phenotype Ontology: HP:0009371

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000029637OMIM
no assertion criteria provided
Pathogenic
(Sep 1, 2009)
germlineliterature only

PubMed (7)
[See all records that cite these PMIDs]

Drinkwater, H. An account of a brachydactylous family. Proc. Royal Soc. Edinburgh 28: 35-57, 1908.

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Mild brachydactyly type A1 maps to chromosome 2q35-q36 and is caused by a novel IHH mutation in a three generation family.

Giordano N, Gennari L, Bruttini M, Mari F, Meloni I, Baldi C, Capoccia S, Geraci S, Merlotti D, Amendola A, Martini G, Nuti R, Gennari C, Renieri A.

J Med Genet. 2003 Feb;40(2):132-5. No abstract available.

PubMed [citation]
PMID:
12566523
PMCID:
PMC1735372

FARABEE'S BRACHYDACTYLOUS KINDRED REVISITED.

HAWS DV, MCKUSICK VA.

Bull Johns Hopkins Hosp. 1963 Jul;113:20-30. No abstract available.

PubMed [citation]
PMID:
14043746
See all PubMed Citations (7)

Details of each submission

From OMIM, SCV000029637.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (7)

Description

In 2 apparently unrelated families with brachydactyly type A1 (BDA1; 112500) studied by Drinkwater (1908, 1914), McCready et al. (2002) found the same asp100-to-asn (D100N) mutation due to a 298G-A transition in the IHH gene.

Giordano et al. (2003) identified the D100N mutation in members of a 3-generation Italian family affected with mild brachydactyly type A1 and no other clinical abnormality except for short stature.

McCready et al. (2005) identified the D100N mutation in descendants of the family with brachydactyly originally described by Farabee (1903) and restudied by Haws and McKusick (1963). Using 16 markers spanning the IHH locus, they identified a common haplotype between this family and the 2 kindreds studied by Drinkwater (1908, 1914) and McCready et al. (2002), suggesting a common founder.

In affected members of a large 4-generation Chinese family with brachydactyly, Zhu et al. (2007) identified heterozygosity for the D100N mutation of the IHH gene. Haplotype analysis revealed that this family carried different alleles at 3 microsatellite markers and 2 intragenic SNPs of the previously published Farabee-Drinkwater haplotype (McCready et al., 2005), indicating that the D100N mutation most likely arose more than once. Zhu et al. (2007) stated that the D100N mutation had been found independently in 7 BDA1 families, whereas all other IHH mutations had been found only once, and suggested that nucleotide 298G represents a mutation hotspot.

In 6 affected members of an 8-generation New Zealand family with BDA1, Byrnes et al. (2009) identified heterozygosity for the D100N mutation in the IHH gene. Haplotype analysis and comparison with the DNA of the BDA1 families studied by Drinkwater (1908, 1914) and Farabee (1903) revealed the presence of a common shared haplotype between markers D2S2250 and D2S1323. Other clinical features observed in the extended New Zealand family included lumbar lordosis, extra teeth, and a shortened fifth metacarpal.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024