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NM_001084.5(PLOD3):c.668A>G (p.Asn223Ser) AND Bone fragility with contractures, arterial rupture, and deafness

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Oct 1, 2008
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000007022.6

Allele description [Variation Report for NM_001084.5(PLOD3):c.668A>G (p.Asn223Ser)]

NM_001084.5(PLOD3):c.668A>G (p.Asn223Ser)

Gene:
PLOD3:procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q22.1
Genomic location:
Preferred name:
NM_001084.5(PLOD3):c.668A>G (p.Asn223Ser)
HGVS:
  • NC_000007.14:g.101215100T>C
  • NG_012148.1:g.7631A>G
  • NM_001084.5:c.668A>GMANE SELECT
  • NP_001075.1:p.Asn223Ser
  • NC_000007.13:g.100858381T>C
  • O60568:p.Asn223Ser
Protein change:
N223S; ASN223SER
Links:
UniProtKB: O60568#VAR_054913; OMIM: 603066.0001; dbSNP: rs121434414
NCBI 1000 Genomes Browser:
rs121434414
Molecular consequence:
  • NM_001084.5:c.668A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Bone fragility with contractures, arterial rupture, and deafness
Synonyms:
LH3 DEFICIENCY; LYSYL HYDROXYLASE 3 DEFICIENCY; BCARD SYNDROME; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0012892; MedGen: C2676285; OMIM: 612394

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000027218OMIM
no assertion criteria provided
Pathogenic
(Oct 1, 2008)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A connective tissue disorder caused by mutations of the lysyl hydroxylase 3 gene.

Salo AM, Cox H, Farndon P, Moss C, Grindulis H, Risteli M, Robins SP, Myllylä R.

Am J Hum Genet. 2008 Oct;83(4):495-503. doi: 10.1016/j.ajhg.2008.09.004. Epub 2008 Oct 2.

PubMed [citation]
PMID:
18834968
PMCID:
PMC2561927

Details of each submission

From OMIM, SCV000027218.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a female patient with a novel connective tissue disorder (BCARD; 612394), Salo et al. (2008) identified compound heterozygosity for 2 mutations in the PLOD3 gene: a 668A-G transition resulting in an asn223-to-ser (N223S) substitution in the region of the glycosyltransferase (GT/GTT) domain, and a 1-basepair deletion (2071delT; 603066.0002). The 2071delT mutation results in a translational frameshift, generating a premature translation stop codon (Cys691AlafsTer9). This mutated allele produces a protein truncated by 40 amino acids and deviates from the LH3 sequence in the last 8 C-terminal amino acids. The missense mutation was inherited from the father, and the deletion from the mother. Enzyme activity assays of recombinant LH3 with the N223S mutation demonstrated substantially reduced collagen GT and GTT activities of LH3 and also reduced LH activity to approximately half of normal levels. Enzyme activity assays of recombinant LH3 with the frameshift mutation resulted in complete loss of the LH activity for LH3 as well as reduced collagen GT and GTT activities.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024