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NM_003630.3(PEX3):c.942-8T>G AND Peroxisome biogenesis disorder 10A (Zellweger)

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Oct 1, 2000
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000006998.3

Allele description [Variation Report for NM_003630.3(PEX3):c.942-8T>G]

NM_003630.3(PEX3):c.942-8T>G

Gene:
PEX3:peroxisomal biogenesis factor 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6q24.2
Genomic location:
Preferred name:
NM_003630.3(PEX3):c.942-8T>G
HGVS:
  • NC_000006.12:g.143485144T>G
  • NG_008459.1:g.39364T>G
  • NM_003630.3:c.942-8T>GMANE SELECT
  • NC_000006.11:g.143806281T>G
  • NM_003630.2:c.942-8T>G
Note:
ClinGen staff contributed the HGVS expression for this variant.
Nucleotide change:
IVS10AS, T-G, -8
Links:
OMIM: 603164.0002; dbSNP: rs267608193
NCBI 1000 Genomes Browser:
rs267608193
Molecular consequence:
  • NM_003630.3:c.942-8T>G - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Peroxisome biogenesis disorder 10A (Zellweger)
Synonyms:
Peroxisome biogenesis disorder 10A
Identifiers:
MONDO: MONDO:0013948; MedGen: C3553999; Orphanet: 912; OMIM: 614882

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000027194OMIM
no assertion criteria provided
Pathogenic
(Oct 1, 2000)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Defective peroxisome membrane synthesis due to mutations in human PEX3 causes Zellweger syndrome, complementation group G.

Muntau AC, Mayerhofer PU, Paton BC, Kammerer S, Roscher AA.

Am J Hum Genet. 2000 Oct;67(4):967-75. Epub 2000 Aug 24.

PubMed [citation]
PMID:
10958759
PMCID:
PMC1287898

PEX3 is the causal gene responsible for peroxisome membrane assembly-defective Zellweger syndrome of complementation group G.

Ghaedi K, Honsho M, Shimozawa N, Suzuki Y, Kondo N, Fujiki Y.

Am J Hum Genet. 2000 Oct;67(4):976-81. Epub 2000 Aug 31.

PubMed [citation]
PMID:
10968777
PMCID:
PMC1287899
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000027194.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In a patient (patient 2, PBDG-02) with Zellweger syndrome of complementation group G (PBD10A; 614882), Muntau et al. (2000) found a T-to-G transversion at position -8 of the 3-prime acceptor splice site of intron 10 of the PEX3 gene. This mutation led to deletion of exon 11 and a frameshift, with a premature termination after 3 amino acids, predicting a 56-amino acid C-terminal truncation of the protein. The male infant was cyanotic and markedly hypotonic at birth with absent deep tendon reflexes. He had a prominent midface and downslanting palpebral fissures, ocular hypertelorism, small low-set ears, a prominent nose, and a high-arched palate. The patient died at age 19 days. A brother had been similarly affected and died at age 15 days. Ghaedi et al. (2000) demonstrated the same mutation in a study of material from the same patient.

Poulos et al. (1995) originally studied this patient (patient 2) and described clinical, pathologic, and biochemical findings.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022