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NM_001171.6(ABCC6):c.3940C>T (p.Arg1314Trp) AND Autosomal recessive inherited pseudoxanthoma elasticum

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Mar 1, 2021
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000006942.9

Allele description [Variation Report for NM_001171.6(ABCC6):c.3940C>T (p.Arg1314Trp)]

NM_001171.6(ABCC6):c.3940C>T (p.Arg1314Trp)

Gene:
ABCC6:ATP binding cassette subfamily C member 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p13.11
Genomic location:
Preferred name:
NM_001171.6(ABCC6):c.3940C>T (p.Arg1314Trp)
HGVS:
  • NC_000016.10:g.16154974G>A
  • NG_007558.3:g.73644C>T
  • NM_001171.6:c.3940C>TMANE SELECT
  • NM_001351800.1:c.3598C>T
  • NP_001162.4:p.Arg1314Trp
  • NP_001162.5:p.Arg1314Trp
  • NP_001338729.1:p.Arg1200Trp
  • LRG_1115t1:c.3940C>T
  • LRG_1115:g.73644C>T
  • LRG_1115p1:p.Arg1314Trp
  • NC_000016.9:g.16248831G>A
  • NG_007558.2:g.73498C>T
  • NM_001171.5:c.3940C>T
  • NR_147784.1:n.3602C>T
  • O95255:p.Arg1314Trp
Protein change:
R1200W; ARG1314TRP
Links:
UniProtKB: O95255#VAR_011495; OMIM: 603234.0006; dbSNP: rs63750759
NCBI 1000 Genomes Browser:
rs63750759
Molecular consequence:
  • NM_001171.6:c.3940C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351800.1:c.3598C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_147784.1:n.3602C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Autosomal recessive inherited pseudoxanthoma elasticum (PXE)
Synonyms:
Gronblad Strandberg syndrome
Identifiers:
MONDO: MONDO:0009925; MedGen: C1275116; Orphanet: 758; OMIM: 264800

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000027138OMIM
no assertion criteria provided
Pathogenic
(Jan 13, 2012)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

SCV000589091PXE International
no assertion criteria provided
Pathogenic
(Mar 1, 2021)
germlineresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes14not providednot provided14not providedresearch
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
.germlineyes6not providednot provided6not providedresearch

Citations

PubMed

Mutation spectrum in the ABCC6 gene and genotype-phenotype correlations in a French cohort with pseudoxanthoma elasticum.

Legrand A, Cornez L, Samkari W, Mazzella JM, Venisse A, Boccio V, Auribault K, Keren B, Benistan K, Germain DP, Frank M, Jeunemaitre X, Albuisson J.

Genet Med. 2017 Aug;19(8):909-917. doi: 10.1038/gim.2016.213. Epub 2017 Jan 19.

PubMed [citation]
PMID:
28102862

Generalized arterial calcification of infancy and pseudoxanthoma elasticum can be caused by mutations in either ENPP1 or ABCC6.

Nitschke Y, Baujat G, Botschen U, Wittkampf T, du Moulin M, Stella J, Le Merrer M, Guest G, Lambot K, Tazarourte-Pinturier MF, Chassaing N, Roche O, Feenstra I, Loechner K, Deshpande C, Garber SJ, Chikarmane R, Steinmann B, Shahinyan T, Martorell L, Davies J, Smith WE, et al.

Am J Hum Genet. 2012 Jan 13;90(1):25-39. doi: 10.1016/j.ajhg.2011.11.020. Epub 2011 Dec 29.

PubMed [citation]
PMID:
22209248
PMCID:
PMC3257960
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000027138.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

Pseudoxanthoma Elasticum

In a patient with autosomal recessive pseudoxanthoma elasticum (PXE; 264800), Le Saux et al. (2000) identified a C-to-T transition at nucleotide 3940 of the ABCC6 gene, resulting in an arg-to-trp substitution at codon 1314 (R1314W). This mutation was found in homozygosity in one family.

Generalized Arterial Calcification of Infancy 2

In a 5-year-old boy with generalized arterial calcification of infancy (GACI2; 614473), Nitschke et al. (2012) identified homozygosity for the R1314W mutation. The boy was born as the first of dizygotic twins, and his twin brother was unaffected. The patient had calcification of the aorta and pulmonary, coronary, and renal arteries as well as other arteries, and stippled calcifications of proximal epiphyses of humeri, femora, pelvic cartilage, larynx, and mandible. He had severely decreased biventricular systolic function, marked cardiomegaly, and severe mitral insufficiency, as well as hypertension and respiratory insufficiency. Cerebral MRI revealed diffuse white matter disease, with cystic encephalomalacia, and laboratory analysis showed hyperbilirubinemia, anemia, and thrombocytopenia. Nitschke et al. (2012) also identified the R1314W mutation in compound heterozygosity in 2 unrelated GACI patients, a French female infant who died at 6 weeks of age and also carried an R1141X mutation (603234.0001), and an Afro-Caribbean male infant who died at 8 weeks of age with generalized arterial stenosis, myocardial infarction, and hypertension and also carried a 1-bp insertion (450insC; 603234.0028) in exon 4 of the ABCC6 gene, predicted to result in a premature stop codon and a truncated protein. In addition, in a 3-year-old South African girl with GACI, Nitschke et al. (2012) identified only a heterozygous R1314W mutation, but noted that mutations in regulatory untranslated regions of ABCC6 might not have been detected by their technique. In the South African child, onset of symptoms occurred at 2.5 years of age, and included calcification of the aorta, spleen, and pancreas, nephrocalcinosis, failure to thrive, hypertension, and heart failure.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From PXE International, SCV000589091.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (1)
2not provided1not providednot providedresearch PubMed (1)
3not provided1not providednot providedresearch PubMed (1)
4not provided1not providednot providedresearch PubMed (1)
5not provided1not providednot providedresearch PubMed (1)
6not provided1not providednot providedresearch PubMed (1)
7not provided1not providednot providedresearch PubMed (1)
8not provided1not providednot providedresearch PubMed (1)
9not provided1not providednot providedresearch PubMed (1)
10not provided1not providednot providedresearch PubMed (1)
11not provided1not providednot providedresearch PubMed (1)
12not provided1not providednot providedresearch PubMed (1)
13not provided1not providednot providedresearch PubMed (1)
14not provided1not providednot providedresearch PubMed (1)
15.1not providednot providedresearch PubMed (1)
16.1not providednot providedresearch PubMed (1)
17.1not providednot providedresearch PubMed (1)
18.1not providednot providedresearch PubMed (1)
19.1not providednot providedresearch PubMed (1)
20.1not providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1bloodnot provided1not providednot providednot provided
2germlineyes1bloodnot provided1not providednot providednot provided
3germlineyes1bloodnot provided1not providednot providednot provided
4germlineyes1bloodnot provided1not providednot providednot provided
5germlineyes1bloodnot provided1not providednot providednot provided
6germlineyes1bloodnot provided1not providednot providednot provided
7germlineyes1bloodnot provided1not providednot providednot provided
8germlineyes1bloodnot provided1not providednot providednot provided
9germlineyes1bloodnot provided1not providednot providednot provided
10germlineyes1bloodnot provided1not providednot providednot provided
11germlineyes1bloodnot provided1not providednot providednot provided
12germlineyes1bloodnot provided1not providednot providednot provided
13germlineyes1bloodnot provided1not providednot providednot provided
14germlineyes1bloodnot provided1not providednot providednot provided
15germlineyes1bloodnot provided1not providednot providednot provided
16germlineyes1bloodnot provided1not providednot providednot provided
17germlineyes1bloodnot provided1not providednot providednot provided
18germlineyes1bloodnot provided1not providednot providednot provided
19germlineyes1bloodnot provided1not providednot providednot provided
20germlineyes1bloodnot provided1not providednot providednot provided

Last Updated: Sep 29, 2024