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NM_004273.5(CHST3):c.776T>C (p.Leu259Pro) AND Spondyloepiphyseal dysplasia with congenital joint dislocations

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Oct 1, 2010
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000006413.3

Allele description [Variation Report for NM_004273.5(CHST3):c.776T>C (p.Leu259Pro)]

NM_004273.5(CHST3):c.776T>C (p.Leu259Pro)

Gene:
CHST3:carbohydrate sulfotransferase 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q22.1
Genomic location:
Preferred name:
NM_004273.5(CHST3):c.776T>C (p.Leu259Pro)
HGVS:
  • NC_000010.11:g.72007807T>C
  • NG_012635.1:g.48446T>C
  • NM_004273.5:c.776T>CMANE SELECT
  • NP_004264.2:p.Leu259Pro
  • NC_000010.10:g.73767565T>C
  • Q7LGC8:p.Leu259Pro
Protein change:
L259P; LEU259PRO
Links:
UniProtKB: Q7LGC8#VAR_047857; OMIM: 603799.0002; dbSNP: rs121908616
NCBI 1000 Genomes Browser:
rs121908616
Molecular consequence:
  • NM_004273.5:c.776T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Spondyloepiphyseal dysplasia with congenital joint dislocations (SEDCJD)
Synonyms:
Kozlowski Celermajer Tink syndrome; Humero-spinal dysostosis with congenital heart disease
Identifiers:
MONDO: MONDO:0007738; MedGen: C1837657; Orphanet: 263463; OMIM: 143095

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000026596OMIM
no assertion criteria provided
Pathogenic
(Oct 1, 2010)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Congenital joint dislocations caused by carbohydrate sulfotransferase 3 deficiency in recessive Larsen syndrome and humero-spinal dysostosis.

Hermanns P, Unger S, Rossi A, Perez-Aytes A, Cortina H, Bonafé L, Boccone L, Setzu V, Dutoit M, Sangiorgi L, Pecora F, Reicherter K, Nishimura G, Spranger J, Zabel B, Superti-Furga A.

Am J Hum Genet. 2008 Jun;82(6):1368-74. doi: 10.1016/j.ajhg.2008.05.006. Erratum in: Am J Hum Genet. 2008 Aug;83(2):293.

PubMed [citation]
PMID:
18513679
PMCID:
PMC2427316

A newly recognized chondrodysplasia with multiple dislocations.

Mégarbané A, Ghanem I.

Am J Med Genet A. 2004 Sep 15;130A(1):107-9. No abstract available.

PubMed [citation]
PMID:
15368507
See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000026596.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

In a 10.5-year-old Turkish-German girl with spondyloepiphyseal dysplasia and congenital joint dislocations (SEDCJD; 143095), born of consanguineous parents, Hermanns et al. (2008) identified homozygosity for a 776T-C transition in exon 3 of the CHST3 gene, resulting in a leu259-to-pro (L259P) substitution at a highly conserved residue. The parents were heterozygous for the mutation, and the patient had an unaffected brother. Functional analysis in cultured skin fibroblasts revealed that the L259P mutation severely impaired or abolished CHST3 function. Unger et al. (2010) restudied this patient and noted that although she had initially been diagnosed as having Larsen syndrome (see 245600), there was now clear evidence of SED with severe spinal degeneration.

In a Lebanese boy with SED and congenital joint dislocations, who was originally reported by Megarbane and Ghanem (2004) and given the diagnosis of 'chondrodysplasia with multiple dislocations,' Unger et al. (2010) identified homozygosity for the L259P mutation in the CHST3 gene.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 11, 2022