U.S. flag

An official website of the United States government

NM_006610.4(MASP2):c.359A>G (p.Asp120Gly) AND Immunodeficiency due to MASP-2 deficiency

Germline classification:
Conflicting interpretations of pathogenicity (4 submissions)
Last evaluated:
Jun 15, 2021
Review status:
criteria provided, conflicting classifications
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000005520.16

Allele description [Variation Report for NM_006610.4(MASP2):c.359A>G (p.Asp120Gly)]

NM_006610.4(MASP2):c.359A>G (p.Asp120Gly)

Gene:
MASP2:MBL associated serine protease 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p36.22
Genomic location:
Preferred name:
NM_006610.4(MASP2):c.359A>G (p.Asp120Gly)
HGVS:
  • NC_000001.11:g.11046609T>C
  • NG_007289.2:g.5620A>G
  • NM_006610.4:c.359A>GMANE SELECT
  • NM_139208.3:c.359A>G
  • NP_006601.2:p.Asp120Gly
  • NP_631947.1:p.Asp120Gly
  • LRG_82t1:c.359A>G
  • LRG_82t2:c.359A>G
  • LRG_82:g.5620A>G
  • LRG_82p1:p.Asp120Gly
  • LRG_82p2:p.Asp120Gly
  • NC_000001.10:g.11106666T>C
  • NG_007289.1:c.359A>G
  • NM_006610.3:c.359A>G
  • O00187:p.Asp120Gly
Protein change:
D120G; ASP120GLY
Links:
Genetic Testing Registry (GTR): GTR000509361; UniProtKB: O00187#VAR_025346; OMIM: 605102.0001; dbSNP: rs72550870
NCBI 1000 Genomes Browser:
rs72550870
Molecular consequence:
  • NM_006610.4:c.359A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139208.3:c.359A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Immunodeficiency due to MASP-2 deficiency
Synonyms:
MASP2 deficiency; LECTIN COMPLEMENT ACTIVATION PATHWAY, DEFECT IN, 2
Identifiers:
MONDO: MONDO:0013423; MedGen: C3151085; OMIM: 613791

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000025702OMIM
no assertion criteria provided
Pathogenic
(Aug 7, 2003)
germlineliterature only

PubMed (4)
[See all records that cite these PMIDs]

SCV000347217Illumina Laboratory Services, Illumina
criteria provided, single submitter

(ICSL Variant Classification Criteria 09 May 2019)
Likely pathogenic
(Oct 20, 2017)
germlineclinical testing

PubMed (6)
[See all records that cite these PMIDs]

Citation Link,

SCV002495836Center for Genomics, Ann and Robert H. Lurie Children's Hospital of Chicago
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Jun 15, 2021)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002573428Clinic of Clinical Immunology with Stem Cell Bank, Expert Centre for Rare Diseases - PID, University Hospital "Alexandrovska"
no assertion criteria provided
Likely pathogenic
(May 1, 2022)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Deficiency of mannan-binding lectin associated serine protease-2 due to missense polymorphisms.

Thiel S, Steffensen R, Christensen IJ, Ip WK, Lau YL, Reason IJ, Eiberg H, Gadjeva M, Ruseva M, Jensenius JC.

Genes Immun. 2007 Mar;8(2):154-63. Epub 2007 Jan 25.

PubMed [citation]
PMID:
17252003

Mannan-binding lectin-associated serine protease-2 (MASP-2) in a large cohort of neonates and its clinical associations.

St Swierzko A, Cedzynski M, Domzalska-Popadiuk I, MacDonald SL, Borkowska-Klos M, Atkinson AP, Szala A, Jopek A, Jensenius JC, Kawakami M, Szczapa J, Matsushita M, Szemraj J, Turner ML, Kilpatrick DC.

Mol Immunol. 2009 May;46(8-9):1696-701. doi: 10.1016/j.molimm.2009.02.022.

PubMed [citation]
PMID:
19307021
See all PubMed Citations (9)

Details of each submission

From OMIM, SCV000025702.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (4)

Description

In a patient with MASP2 deficiency (613791), Stengaard-Pedersen et al. (2003) identified homozygosity for a mutation in exon 3 of the MASP2 gene, resulting in an asp120-to-gly (D120G) substitution (or asp105-to-gly (D105G) in the mature protein) in the CUB1 domain. The patient was in his mid-thirties and had frequent infections and chronic inflammatory disease, including pulmonary fibrosis. The mutation was present in heterozygous state in the patient's parents, brother, and both of his children.

Heterozygosity for the D120G SNP has been shown to occur in Caucasians at a frequency of 3.9% (Thiel et al., 2007). Sokolowska et al. (2015) noted that early reports estimated a frequency of total MASP2 deficiency due a homozygous D120G SNP of 6 in 10,000 (0.0006), whereas subsequent reports indicated that the frequency may be higher, up to 0.0036 or 0.0061.

St. Swierzko et al. (2009) investigated cord blood MASP2 concentrations in a large cohort of 1,788 neonates of Caucasian origin: the median value was 93 ng/ml. Serum MASP2 concentrations correlated with gestational age and birthweight and were significantly lower in premature babies and other pre-term babies compared with term babies. Neonates with MASP2 concentrations below 42 ng/ml were considered to be MASP2-deficient and had a shorter mean gestational age and a higher incidence of prematurity and low birthweight; however, they did not have increased perinatal infections compared to the others. Among 362 samples tested for the D120G SNP, none were homozygous. Heterozygosity for this allele significantly influenced the protein concentration, but not the lectin pathway of complement activity (MBL-MASP2 complex activity). There was no association between this SNP and prematurity, low birthweight, or perinatal infections.

Sokolowska et al. (2015) reported 2 unrelated individuals with pulmonary tuberculosis who were homozygous for the MASP2 D120G polymorphism. One was a 72-year-old man with chronic obstructive pulmonary disease, whereas the other was a 36-year-old woman with no other comorbidities. In addition, 1 of 276 healthy controls was homozygous for the D120G variant. All 3 individuals had low MASP2 serum concentrations and low MBL-MASP2 complex activities. One of the tuberculosis patients also had an MBL2 (154545) mutation (154545.0001) that affected both MBL serum concentration and activity. In a review of published cases including their 2 cases, Sokolowska et al. (2015) noted that 10 patients with MASP2 deficiency and serious diseases, mainly affecting the respiratory tract, had been reported. However, 7 healthy controls homozygous for MASP2 deficiency had also been reported. Thus, the clinical impact of MASP2 deficiency remained uncertain.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From Illumina Laboratory Services, Illumina, SCV000347217.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (6)

Description

The MASP2 c.359A>G (p.Asp120Gly) missense variant has been reported in two studies in which it is described in a homozygous state in two individuals with recurrent infections and low serum MASP2 levels (Stengaard-Pedersen et al. 2003; Cedzynski et al. 2004). Additional family members who were heterozygous for the variant were found to have low serum MASP2 concentrations but no clinical symptoms. The p.Asp120Gly variant has also been investigated in healthy unrelated individuals from different populations. Four individuals were found to carry the p.Asp120Gly variant in a homozygous state and have MASP2 deficiency but show no clinical symptoms (García-Laorden et al. 2006; Olszowski et al. 2014; Sokolowska et al. 2015). Functional studies by Stengaard-Pedersen et al. (2003) and Thiel et al. (2009) demonstrated that the p.Asp120Gly variant had a reduced capacity to activate complement through the MBL-initiated classical pathway. While the allele frequency for the p.Asp120Gly variant appears to be high at 0.0479 in the European (Finnish) population of the Exome Aggregation Consortium, studies have shown an over-representation of this variant in individuals with low levels of MASP2 as compared to controls. Many individuals who carry variants classified as pathogenic in MASP2 never experience clinical symptoms, and therefore this variant is thought to confer a mildly elevated risk for infection and inflammatory diseases. Based on the evidence, the p.Asp120Gly variant is classified as likely pathogenic for MASP2 deficiency. This variant was observed by ICSL as part of a predisposition screen in an ostensibly healthy population.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Center for Genomics, Ann and Robert H. Lurie Children's Hospital of Chicago, SCV002495836.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

MASP2 NM_006610.3 exon 3 p.Asp120Gly (c.359A>G): This variant has been reported in the literature in multiple individuals with a broad spectrum of immunodeficiency and autoimmune phenotypes in the heterozygous and homozygous state (Stengaard-Pedersen 2003 PMID:12904520, Schafranski 2008 PMID:18295674, Swierzko 2009 PMID:19307021, Goeldner 2014 PMID:24632598, Olszowski 2014 PMID:24332888, Rodriguez-Flores 2014 PMID:24123366, Garcia Laorden 2020 PMID:31828694). However, numerous individuals with this variant have been reported to be clinically unaffected and this variant is present in 5% (536/10618) of Finnish alleles including 8 homozygotes in the Genome Aggregation Database (https://gnomad.broadinstitute.org/variant/1-11046609-T-C?dataset=gnomad_r3). This variant is present in ClinVar (Variation ID:5210). Evolutionary conservation and computational predictive tools suggest that this variant may impact the protein. In vitro functional studies support that this variant will impact the protein resulting in MASP2 deficiency (Thiel 2009 PMID:19234189, Valles 2009 PMID:19775369). However, these studies may not accurately represent in vivo biological function. Overall, data on this variant supports an association to MASP2 deficiency but it is unclear whether MASP2 deficiency has a clinical impact. This uncertainty, as well as the very high minor allele frequency suggests that this variant may be more accurately classified as a risk allele vs. a mendelian disease variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Clinic of Clinical Immunology with Stem Cell Bank, Expert Centre for Rare Diseases - PID, University Hospital "Alexandrovska", SCV002573428.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024