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NM_013319.3(UBIAD1):c.305A>G (p.Asn102Ser) AND Schnyder crystalline corneal dystrophy

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Feb 1, 2013
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000000904.3

Allele description [Variation Report for NM_013319.3(UBIAD1):c.305A>G (p.Asn102Ser)]

NM_013319.3(UBIAD1):c.305A>G (p.Asn102Ser)

Gene:
UBIAD1:UbiA prenyltransferase domain containing 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p36.22
Genomic location:
Preferred name:
NM_013319.3(UBIAD1):c.305A>G (p.Asn102Ser)
HGVS:
  • NC_000001.11:g.11273836A>G
  • NG_009443.2:g.5639A>G
  • NM_001330349.2:c.305A>G
  • NM_001330350.2:c.305A>G
  • NM_013319.3:c.305A>GMANE SELECT
  • NP_001317278.1:p.Asn102Ser
  • NP_001317279.1:p.Asn102Ser
  • NP_037451.1:p.Asn102Ser
  • NC_000001.10:g.11333893A>G
  • Q9Y5Z9:p.Asn102Ser
Protein change:
N102S; ASN102SER
Links:
UniProtKB: Q9Y5Z9#VAR_043714; OMIM: 611632.0001; dbSNP: rs118203945
NCBI 1000 Genomes Browser:
rs118203945
Molecular consequence:
  • NM_001330349.2:c.305A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001330350.2:c.305A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_013319.3:c.305A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Schnyder crystalline corneal dystrophy (SCCD)
Synonyms:
Corneal dystrophy crystalline of Schnyder; Schnyder corneal dystrophy; Crystalline corneal dystrophy
Identifiers:
MONDO: MONDO:0007374; MedGen: C0271287; Orphanet: 98967; OMIM: 121800; Human Phenotype Ontology: HP:0007760

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000021054OMIM
no assertion criteria provided
Pathogenic
(Feb 1, 2013)
germlineliterature only

PubMed (7)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Schnyder corneal crystalline dystrophy: description of a new family with evidence of abnormal lipid storage in skin fibroblasts.

Battisti C, Dotti MT, Malandrini A, Pezzella F, Bardelli AM, Federico A.

Am J Med Genet. 1998 Jan 6;75(1):35-9.

PubMed [citation]
PMID:
9450854

Mutations in the UBIAD1 gene, encoding a potential prenyltransferase, are causal for Schnyder crystalline corneal dystrophy.

Orr A, Dubé MP, Marcadier J, Jiang H, Federico A, George S, Seamone C, Andrews D, Dubord P, Holland S, Provost S, Mongrain V, Evans S, Higgins B, Bowman S, Guernsey D, Samuels M.

PLoS One. 2007 Aug 1;2(8):e685.

PubMed [citation]
PMID:
17668063
PMCID:
PMC1925147
See all PubMed Citations (7)

Details of each submission

From OMIM, SCV000021054.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (7)

Description

In affected members of a family with Schnyder crystalline corneal dystrophy (SCCD; 121800) originally described by Battisti et al. (1998), Orr et al. (2007) identified heterozygosity for an A-to-G transition in the UBIAD1 gene, resulting in an asn102-to-ser (N102S) substitution. The mutation was not found in unaffected family members or in 144 Nova Scotian controls, 59 unrelated Caucasian CEPH HapMap DNA samples, or 89 unrelated Asian HapMap DNA samples.

In affected members of 5 unrelated Caucasian families with SCCD, 2 of which were previously reported as pedigrees '11' and '12' in a mapping analysis by Theendakara et al. (2004), Weiss et al. (2007) identified heterozygosity for the N102S substitution. Asn102 is evolutionarily conserved. Prediction of the protein structure indicated that a prenyltransferase domain and several transmembrane helices are affected by the mutation. The mutation was not found in any unaffected family members tested or in 200 control chromosomes.

In affected members from 5 families with SCCD, 2 of which were American, 1 Czechoslovakian, 1 Taiwanese, and 1 German (previously described as 'family I' by Lisch et al., 1986), Weiss et al. (2008) identified heterozygosity for the N102S mutation in exon 1 of the UBIAD1 gene. The mutation was not found in 200 chromosomes from 100 unrelated Caucasian DNA samples.

Nickerson et al. (2013) analyzed SCCD patient B-cell lysates and observed that the N102S mutant had significantly reduced biosynthetic activity, 22% lower than that of wildtype UBIAD1.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2022