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GRCh37/hg19 6q15-16.3(chr6:92576950-104658245) AND not specified

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 1, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002053599.3

Allele description [Variation Report for GRCh37/hg19 6q15-16.3(chr6:92576950-104658245)]

GRCh37/hg19 6q15-16.3(chr6:92576950-104658245)

Genes:
  • EPHA7:EPH receptor A7 [Gene - OMIM - HGNC]
  • FBXL4:F-box and leucine rich repeat protein 4 [Gene - OMIM - HGNC]
  • GPR63:G protein-coupled receptor 63 [Gene - OMIM - HGNC]
  • MMS22L:MMS22 like, DNA repair protein [Gene - OMIM - HGNC]
  • NDUFAF4:NADH:ubiquinone oxidoreductase complex assembly factor 4 [Gene - OMIM - HGNC]
  • PNISR:PNN interacting serine and arginine rich protein [Gene - OMIM - HGNC]
  • POU3F2:POU class 3 homeobox 2 [Gene - OMIM - HGNC]
  • PRDM13:PR/SET domain 13 [Gene - OMIM - HGNC]
  • SIM1:SIM bHLH transcription factor 1 [Gene - OMIM - HGNC]
  • UFL1:UFM1 specific ligase 1 [Gene - OMIM - HGNC]
  • ASCC3:activating signal cointegrator 1 complex subunit 3 [Gene - OMIM - HGNC]
  • COQ3:coenzyme Q3, methyltransferase [Gene - OMIM - HGNC]
  • CCNC:cyclin C [Gene - OMIM - HGNC]
  • FAXC:failed axon connections homolog, metaxin like GST domain containing [Gene - HGNC]
  • FHL5:four and a half LIM domains 5 [Gene - OMIM - HGNC]
  • FUT9:fucosyltransferase 9 [Gene - OMIM - HGNC]
  • GRIK2:glutamate ionotropic receptor kainate type subunit 2 [Gene - OMIM - HGNC]
  • KLHL32:kelch like family member 32 [Gene - HGNC]
  • MANEA:mannosidase endo-alpha [Gene - OMIM - HGNC]
  • MCHR2:melanin concentrating hormone receptor 2 [Gene - OMIM - HGNC]
  • TSTD3:thiosulfate sulfurtransferase like domain containing 3 [Gene - HGNC]
  • USP45:ubiquitin specific peptidase 45 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
6q15-16.3
Genomic location:
Chr6: 92576950 - 104658245 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 6q15-16.3(chr6:92576950-104658245)
HGVS:
NC_000006.11:g.(?_92576950)_(104658245_?)del
Observations:
1

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002320395ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories
criteria provided, single submitter

(ARUP Cytogenomic Constitutional CNV Assertion Criteria)
Pathogenic
(Mar 1, 2022)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown1not providednot providednot providednot providedclinical testing

Details of each submission

From ARUP Laboratories, Cytogenetics and Genomic Microarray, ARUP Laboratories, SCV002320395.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided1not providednot providednot provided

Last Updated: Sep 1, 2024