NC_000016.10:g.679981_680045del AND not provided

Germline classification:: Benign (1 submission)
Last evaluated:: May 15, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001693825.1

Allele description [Variation Report for NC_000016.10:g.679981_680045del]

NC_000016.10:g.679981_680045del

Genes:

LOC130058120:ATAC-STARR-seq lymphoblastoid silent region 6939 [Gene]
STUB1:STIP1 homology and U-box containing protein 1 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

16p13.3

Genomic location:

Preferred name:

NC_000016.10:g.679981_680045del

HGVS:

NC_000016.10:g.679981_680045del
NG_034141.1:g.4871_4935del
NC_000016.9:g.729981_730045del

Links:

dbSNP: rs1567278480

NCBI 1000 Genomes Browser:

rs1567278480

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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protein-cysteine N-palmitoyltransferase HHAT-like protein isoform X2 [Rattus nor...
protein-cysteine N-palmitoyltransferase HHAT-like protein isoform X2 [Rattus norvegicus]
gi|564366281|ref|XP_006244153.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001914700	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Benign (May 15, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001914700

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Benign
(May 15, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV001914700.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 24, 2023

ClinVar

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