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GRCh37/hg19 2p23.1-22.3(chr2:31958977-33946495)x1 AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 20, 2018
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000846044.2

Allele description [Variation Report for GRCh37/hg19 2p23.1-22.3(chr2:31958977-33946495)x1]

GRCh37/hg19 2p23.1-22.3(chr2:31958977-33946495)x1

Genes:
  • NLRC4:NLR family CARD domain containing 4 [Gene - OMIM - HGNC]
  • RASGRP3:RAS guanyl releasing protein 3 [Gene - OMIM - HGNC]
  • YIPF4:Yip1 domain family member 4 [Gene - OMIM - HGNC]
  • BIRC6:baculoviral IAP repeat containing 6 [Gene - OMIM - HGNC]
  • DPY30:dpy-30 histone methyltransferase complex regulatory subunit [Gene - OMIM - HGNC]
  • FAM98A:family with sequence similarity 98 member A [Gene - HGNC]
  • LTBP1:latent transforming growth factor beta binding protein 1 [Gene - OMIM - HGNC]
  • MEMO1:mediator of cell motility 1 [Gene - OMIM - HGNC]
  • SLC30A6:solute carrier family 30 member 6 [Gene - OMIM - HGNC]
  • SPAST:spastin [Gene - OMIM - HGNC]
  • TTC27:tetratricopeptide repeat domain 27 [Gene - HGNC]
Variant type:
copy number loss
Cytogenetic location:
2p23.1-22.3
Genomic location:
Chr2: 31958977 - 33946495 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 2p23.1-22.3(chr2:31958977-33946495)x1
HGVS:
NC_000002.11:g.(?_31958977)_(33946495_?)del

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000988165Bionano Laboratories
no assertion criteria provided
Pathogenic
(Mar 20, 2018) 		unknownclinical testing

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Bionano Laboratories, SCV000988165.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providedBuccalnot providednot providednot providednot providednot provided

Last Updated: Dec 11, 2022