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GRCh37/hg19 2q11.1-12.3(chr2:95529039-108518266) AND See cases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Nov 30, 2010
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000449270.3

Allele description

GRCh37/hg19 2q11.1-12.3(chr2:95529039-108518266)

Genes:
  • AFF3:ALF transcription elongation factor 3 [Gene - OMIM - HGNC]
  • ARID5A:AT-rich interaction domain 5A [Gene - OMIM - HGNC]
  • CNOT11:CCR4-NOT transcription complex subunit 11 [Gene - HGNC]
  • CRACDL:CRACD like [Gene - HGNC]
  • ECRG4:ECRG4 augurin precursor [Gene - OMIM - HGNC]
  • GPR45:G protein-coupled receptor 45 [Gene - OMIM - HGNC]
  • ITPRIPL1:ITPRIP like 1 [Gene - HGNC]
  • KANSL3:KAT8 regulatory NSL complex subunit 3 [Gene - OMIM - HGNC]
  • LONRF2:LON peptidase N-terminal domain and ring finger 2 [Gene - HGNC]
  • NCK2:NCK adaptor protein 2 [Gene - OMIM - HGNC]
  • POU3F3:POU class 3 homeobox 3 [Gene - OMIM - HGNC]
  • RGPD3:RANBP2 like and GRIP domain containing 3 [Gene - OMIM - HGNC]
  • RGPD4:RANBP2 like and GRIP domain containing 4 [Gene - OMIM - HGNC]
  • REV1:REV1 DNA directed polymerase [Gene - OMIM - HGNC]
  • ST6GAL2:ST6 beta-galactoside alpha-2,6-sialyltransferase 2 [Gene - OMIM - HGNC]
  • STARD7:StAR related lipid transfer domain containing 7 [Gene - OMIM - HGNC]
  • TBC1D8:TBC1 domain family member 8 [Gene - HGNC]
  • UXS1:UDP-glucuronate decarboxylase 1 [Gene - OMIM - HGNC]
  • ACTR1B:actin related protein 1B [Gene - OMIM - HGNC]
  • ADRA2B:adrenoceptor alpha 2B [Gene - OMIM - HGNC]
  • MGAT4A:alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A [Gene - OMIM - HGNC]
  • ANKRD23:ankyrin repeat domain 23 [Gene - OMIM - HGNC]
  • ANKRD36:ankyrin repeat domain 36 [Gene - OMIM - HGNC]
  • ANKRD36B:ankyrin repeat domain 36B [Gene - HGNC]
  • ANKRD36C:ankyrin repeat domain 36C [Gene - HGNC]
  • ANKRD39:ankyrin repeat domain 39 [Gene - HGNC]
  • ASTL:astacin like metalloendopeptidase [Gene - OMIM - HGNC]
  • CHST10:carbohydrate sulfotransferase 10 [Gene - OMIM - HGNC]
  • CREG2:cellular repressor of E1A stimulated genes 2 [Gene - OMIM - HGNC]
  • C2orf15:chromosome 2 open reading frame 15 [Gene - HGNC]
  • C2orf49:chromosome 2 open reading frame 49 [Gene - HGNC]
  • CNGA3:cyclic nucleotide gated channel subunit alpha 3 [Gene - OMIM - HGNC]
  • CNNM3:cyclin and CBS domain divalent metal cation transport mediator 3 [Gene - OMIM - HGNC]
  • CNNM4:cyclin and CBS domain divalent metal cation transport mediator 4 [Gene - OMIM - HGNC]
  • COA5:cytochrome c oxidase assembly factor 5 [Gene - OMIM - HGNC]
  • COX5B:cytochrome c oxidase subunit 5B [Gene - OMIM - HGNC]
  • CIAO1:cytosolic iron-sulfur assembly component 1 [Gene - OMIM - HGNC]
  • DUSP2:dual specificity phosphatase 2 [Gene - OMIM - HGNC]
  • EIF5B:eukaryotic translation initiation factor 5B [Gene - OMIM - HGNC]
  • FAM178B:family with sequence similarity 178 member B [Gene - HGNC]
  • FER1L5:fer-1 like family member 5 [Gene - HGNC]
  • FHL2:four and a half LIM domains 2 [Gene - OMIM - HGNC]
  • FAHD2A:fumarylacetoacetate hydrolase domain containing 2A [Gene - HGNC]
  • FAHD2B:fumarylacetoacetate hydrolase domain containing 2B [Gene - HGNC]
  • GPAT2:glycerol-3-phosphate acyltransferase 2, mitochondrial [Gene - OMIM - HGNC]
  • INPP4A:inositol polyphosphate-4-phosphatase type I A [Gene - OMIM - HGNC]
  • IL1RL1:interleukin 1 receptor like 1 [Gene - OMIM - HGNC]
  • IL1RL2:interleukin 1 receptor like 2 [Gene - OMIM - HGNC]
  • IL1R1:interleukin 1 receptor type 1 [Gene - OMIM - HGNC]
  • IL1R2:interleukin 1 receptor type 2 [Gene - OMIM - HGNC]
  • IL18R1:interleukin 18 receptor 1 [Gene - OMIM - HGNC]
  • IL18RAP:interleukin 18 receptor accessory protein [Gene - OMIM - HGNC]
  • LMAN2L:lectin, mannose binding 2 like [Gene - OMIM - HGNC]
  • LIPT1:lipoyltransferase 1 [Gene - OMIM - HGNC]
  • LYG1:lysozyme g1 [Gene - HGNC]
  • LYG2:lysozyme g2 [Gene - OMIM - HGNC]
  • MFSD9:major facilitator superfamily domain containing 9 [Gene - HGNC]
  • MAL:mal, T cell differentiation protein [Gene - OMIM - HGNC]
  • MITD1:microtubule interacting and trafficking domain containing 1 [Gene - HGNC]
  • MRPL30:mitochondrial ribosomal protein L30 [Gene - OMIM - HGNC]
  • MRPS5:mitochondrial ribosomal protein S5 [Gene - OMIM - HGNC]
  • MRPS9:mitochondrial ribosomal protein S9 [Gene - OMIM - HGNC]
  • MAP4K4:mitogen-activated protein kinase kinase kinase kinase 4 [Gene - OMIM - HGNC]
  • NMS:neuromedin S [Gene - OMIM - HGNC]
  • NPAS2:neuronal PAS domain protein 2 [Gene - OMIM - HGNC]
  • NCAPH:non-SMC condensin I complex subunit H [Gene - OMIM - HGNC]
  • PDCL3:phosducin like 3 [Gene - OMIM - HGNC]
  • KCNIP3:potassium voltage-gated channel interacting protein 3 [Gene - OMIM - HGNC]
  • PROM2:prominin 2 [Gene - OMIM - HGNC]
  • RFX8:regulatory factor X8 [Gene - HGNC]
  • RPL31:ribosomal protein L31 [Gene - OMIM - HGNC]
  • RNF149:ring finger protein 149 [Gene - HGNC]
  • SEMA4C:semaphorin 4C [Gene - OMIM - HGNC]
  • SNRNP200:small nuclear ribonucleoprotein U5 subunit 200 [Gene - OMIM - HGNC]
  • SLC9A2:solute carrier family 9 member A2 [Gene - OMIM - HGNC]
  • SLC9A4:solute carrier family 9 member A4 [Gene - OMIM - HGNC]
  • TEKT4:tektin 4 [Gene - HGNC]
  • TSGA10:testis specific 10 [Gene - OMIM - HGNC]
  • TXNDC9:thioredoxin domain containing 9 [Gene - OMIM - HGNC]
  • TGFBRAP1:transforming growth factor beta receptor associated protein 1 [Gene - OMIM - HGNC]
  • TMEM127:transmembrane protein 127 [Gene - OMIM - HGNC]
  • TMEM131:transmembrane protein 131 [Gene - OMIM - HGNC]
  • TMEM182:transmembrane protein 182 [Gene - HGNC]
  • TRIM43:tripartite motif containing 43 [Gene - HGNC]
  • TRIM43B:tripartite motif containing 43B [Gene - HGNC]
  • UNC50:unc-50 inner nuclear membrane RNA binding protein [Gene - OMIM - HGNC]
  • VWA3B:von Willebrand factor A domain containing 3B [Gene - OMIM - HGNC]
  • ZAP70:zeta chain of T cell receptor associated protein kinase 70 [Gene - OMIM - HGNC]
  • ZNF2:zinc finger protein 2 [Gene - OMIM - HGNC]
  • ZNF514:zinc finger protein 514 [Gene - HGNC]
Variant type:
copy number gain
Cytogenetic location:
2q11.1-12.3
Genomic location:
Chr2: 95529039 - 108518266 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 2q11.1-12.3(chr2:95529039-108518266)
HGVS:
    Links:
    dbVar: nssv585227; dbVar: nsv498511
    Observations:
    1

    Condition(s)

    Name:
    See cases [See the Variation display for details]
    Identifiers:

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    Assertion and evidence details

    Submission AccessionSubmitterReview Status
    (Assertion method)
    Clinical Significance
    (Last evaluated)
    OriginMethodCitations
    SCV000501178ISCA Site 6

    See additional submitters

    no assertion criteria provided
    Pathogenic
    (Nov 30, 2010)
    not providedclinical testing

    PubMed (1)
    [See all records that cite this PMID]

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providednot providedyes1not providednot providednot providednot providedclinical testing

    Citations

    PubMed

    Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

    Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

    Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

    PubMed [citation]
    PMID:
    20466091
    PMCID:
    PMC2869000

    Details of each submission

    From ISCA Site 6, SCV000501178.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not provided1not providednot providedclinical testing PubMed (1)
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1not providedyesnot providednot providedDiscovery1not providednot providednot provided

    Last Updated: Mar 26, 2023