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GRCh38/hg38 10q26.3(chr10:133421283-133558988)x1 AND See cases

Germline classification:
Benign (1 submission)
Last evaluated:
Oct 14, 2010
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000135908.4

Allele description

GRCh38/hg38 10q26.3(chr10:133421283-133558988)x1

Genes:
  • LOC130005032:ATAC-STARR-seq lymphoblastoid active region 4252 [Gene]
  • LOC130005033:ATAC-STARR-seq lymphoblastoid active region 4253 [Gene]
  • LOC130005034:ATAC-STARR-seq lymphoblastoid active region 4254 [Gene]
  • LOC130005035:ATAC-STARR-seq lymphoblastoid silent region 2983 [Gene]
  • LOC130005036:ATAC-STARR-seq lymphoblastoid silent region 2984 [Gene]
  • LOC126861107:BRD4-independent group 4 enhancer GRCh37_chr10:135344892-135346091 [Gene]
  • LOC110599585:CYP2E1 5' regulatory region [Gene]
  • LOC129390242:MPRA-validated peak1138 silencer [Gene]
  • CYP2E1:cytochrome P450 family 2 subfamily E member 1 [Gene - OMIM - HGNC]
  • MTG1:mitochondrial ribosome associated GTPase 1 [Gene - HGNC]
  • SCART1:scavenger receptor family member expressed on T cells 1 [Gene - HGNC]
  • SPRN:shadow of prion protein [Gene - OMIM - HGNC]
  • SYCE1:synaptonemal complex central element protein 1 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
10q26.3
Genomic location:
Preferred name:
GRCh38/hg38 10q26.3(chr10:133421283-133558988)x1
HGVS:
  • NC_000010.11:g.(?_133421283)_(133558988_?)del
  • NC_000010.10:g.(?_135234787)_(135372492_?)del
  • NC_000010.9:g.(?_135084777)_(135222482_?)del
Links:
dbVar: nssv581754; dbVar: nsv533193
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000175920ISCA site 8

See additional submitters

no assertion criteria provided
Benign
(Oct 14, 2010) 		not providedclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providedyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

PubMed [citation]
PMID:
20466091
PMCID:
PMC2869000

Details of each submission

From ISCA site 8, SCV000175920.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not providedyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: Oct 14, 2023