| | LOC115995524, LOC115995525 +2647 more | Copy number gain | See cases | |
| | LOC123453201, LOC123453202 +1450 more | Copy number gain | See cases | |
| | LOC129938169, LOC129938170 +1318 more | Copy number gain | See cases | |
| | LOC108281160, LOC108281177 +1247 more | Copy number gain | See cases | |
| | ABCC5, ABCC5-AS1 +1245 more | Copy number gain | See cases | |
| | LOC132088897, LOC132088898 +1201 more | Copy number gain | See cases | |
| | LOC129938260, LOC129938261 +1064 more | Copy number gain | See cases | |
| | ABCC5, ABCC5-AS1 +627 more | Copy number gain | See cases | |
| | LOC129938077, LOC129938078 +1041 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC129938282, LOC129938283 +866 more | Copy number gain | See cases | |
| | | Duplication | Currarino triad | |
| | LINC01206, ACTL6A +44 more | Deletion | Anophthalmia/microphthalmia-esophageal atresia syndrome | |
| | ABCC5, ABCC5-AS1 +399 more | Copy number loss | See cases | |
| | LINC01206, LINC01994 +13 more | Copy number loss | See cases | |
| | LINC01206, LOC108281177 +8 more | Copy number loss | See cases | |
| | LOC108281177, LOC108281178 +2 more | Copy number gain | See cases | |
| | LOC108281177, LOC108281178 +2 more | Copy number loss | See cases | |
| | LOC108281177, LOC108281178 +2 more | Copy number loss | See cases | |
| | LOC108281177, LOC108281178 +3 more | Deletion | Anophthalmia/microphthalmia-esophageal atresia syndrome | |