6NYA


Conserved Protein Domain Family
UBCc_ScCDC34-like

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cd23811: UBCc_ScCDC34-like 
Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of Saccharomyces cerevisiae CDC34 and related proteins
Saccharomyces cerevisiae CDC34 (EC 2.3.2.23), also called ubiquitin-conjugating enzyme E2-34 kDa, cell division control protein 34, E2 ubiquitin-conjugating enzyme 3 (UBC3), DNA6, or ubiquitin ligase complex SCF subunit CDC34, catalyzes the covalent attachment of ubiquitin to other proteins. In vitro, it may ubiquitinate histone H2A. CDC34 mediates the initiation of DNA replication (transition of G1 to S phase in cell cycle). It is the catalytic subunit of an SCF ubiquitin-protein ligase complex (together with Skp1p, Rbx1p, CDC53, and an F-box protein) that regulates cell cycle progression by targeting key substrates for degradation. Moreover, CDC34 is involved in the regulation of methionine biosynthesis genes and in the degradation of CDC6 together with CDC4 and CDC53.
Statistics
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PSSM-Id: 467431
Aligned: 7 rows
Threshold Bit Score: 265.073
Created: 10-Aug-2017
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1: active site cysteine [active site], 1 residue position
Conserved feature residue pattern:CClick to see conserved feature residue pattern help
Evidence:
  • Comment:forms a thioester with ubiquitin or ubiquitin-like proteins
  • Comment:serves as the point of attachment of ubiquitin prior to transfer to cellular target
  • Citation:PMID 9497353
  • Citation:PMID 9705497

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
6NYA_C        10 ASSLLLRQYRELTDPKkaipSFHIELEDd---------------------sNIFTWNIGVMVLNEDSiYHGGFFKAQMRF 68  Saccharomyces c...
CAD21393      10 ATTRLMSEMKALRKEK----WIHFEDVRpstvrffsfaglsfagaddsatlNILKWRFGLMVINPDSaFNGGYFRAEMVF 85  Neurospora crassa
XP_023896077   2 AEKILMNEYKALSKET----WTNISLIEe----------------------SIFEWSVALIVLNPDSlYYGGYFKATMKF 55  Quercus suber
GAO50472      50 AAPLLTKQFRDLTGKKgl-pGVYAELVNd----------------------NIFVWQIGIAPTDKDSvYYGGYYKAEIKF 106 Saitoella compl...
ODV89252       5 SSSLIMKQYAALRDPKtklaSFQVELKDd----------------------DIYTWIVYIFMLDKDSlYYGGIFRAEMVF 62  Tortispora case...
XP_029323245   3 SAKILWKEFRELTHPKtglkQVHVDVEEn----------------------DVFLWKVSLMVVDPESiYNGACLQGQMRF 60  Pichia kudriavz...
XP_029322467   3 AAAILAKELKELSKNP----TYHISLDNd----------------------SIFDWTLGMYIINPESpWNHYYLSAKINF 56  Pichia kudriavz...
Feature 1                                    #                                                   
6NYA_C        69 PeDFPFSPPQFRFTpAIYHPNVYRDGRLCISILHQSGDpmtd-epdaETWSPVQtVESVLISIVSLLEDPNINSPANVDA 147 Saccharomyces c...
CAD21393      86 SdEYPYQPPKFRFLiPITHPNVYPDGQLCISILHTPGEdlmsgeqasERWSPLQgAESVLRSVLLLLDDPEINSPANVDA 165 Neurospora crassa
XP_023896077  56 PrDYPFSPPDFRFNrPLWHPNVYPDGRLCISILHQPGDdamsgeaagERWSPVQrVESVLISVLSLLDDAEVSSPANVDA 135 Quercus suber
GAO50472     107 PrDYPFMPPSFRFLrPVFHPNIYKDGKLCISILHPPGDdpqsgesaaERWSPAQsVESIILSIMSLLEDPNCSSPANVDA 186 Saitoella compl...
ODV89252      63 PiDYPFSPPRFRFLtPVYHPNVYPTGELCISILHSGEDetsg-eaaaERWSPAQtAESVLLSILSLLEDPNPNSPANIDA 141 Tortispora case...
XP_029323245  61 PsNYPYSPPSFRFTpAIFHPNVYPDGRLCISILHSAGQqeasdeplnITWSPAQkVESVLLSILSLLEDPNVASPANVEA 140 Pichia kudriavz...
XP_029322467  57 PqNYPFSPPSFRFSpPIFHPNVYSDGRVCISILHEAGTqyqd-epsnENWSPAQcVESVIMSIVSILDDPNILSPANVDA 135 Pichia kudriavz...
Feature 1                                         
6NYA_C       148 AVDYRKnpEQYKQRVKMEVERSKQDIPKGFIMP 180 Saccharomyces cerevisiae S288C
CAD21393     166 GVMYRDrrEDYNKKARETVERSKKDIPPGFEMP 198 Neurospora crassa
XP_023896077 136 GVMLRKepQAYKERVKQDKEKSKADIPADFEMP 168 Quercus suber
GAO50472     187 GVLWRKdrDEYRSIVQKQVEETKADIPKDFKMP 219 Saitoella complicata NRRL Y-17804
ODV89252     142 GVDFRNnmERYKQKVLQTVENSKETLPAGIEFP 174 Tortispora caseinolytica NRRL Y-17796
XP_029323245 141 GIAYRKqrDLYNDKVKADVLKSIEAMPSDIVWP 173 Pichia kudriavzevii
XP_029322467 136 SKLWRDhrEEYKDKIRKKAEQSRISIPEDFVIP 168 Pichia kudriavzevii

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