Table 3.

Selected Chromatin-Modifying Disorders of Interest in the Differential Diagnosis of TET3-Related Beck-Fahrner Syndrome

GeneDisorderMOIClinical Characteristics
ASXL3 Bainbridge-Ropers syndrome ADDD/ID w/speech & language delay &/or absent speech. Autistic features & issues w/feeding in some persons. Typically nonspecific dysmorphic facial features. Affected persons may have hypotonia that can transition to spasticity resulting in unusual posture w/flexion contractions of elbows, wrists, & fingers.
DNMT3A 1 Tatton-Brown-Rahman syndrome ADOvergrowth/ID syndrome. Obesity / ↑ weight, joint hypermobility, hypotonia, behavioral/psychiatric issues, kyphoscoliosis, & seizures. Subtle dysmorphic features, incl round face w/coarse features, thick horizontal low-set eyebrows, narrow (as measured vertically) palpebral fissures, & prominent upper central incisors. (Facial gestalt is most easily recognizable in teenage yrs.)
Heyn-Sproule-Jackson syndrome (OMIM 618724)ADDD/ID; microcephaly; short stature; strabismus
FMR1 Fragile X syndrome (See FMR1 Disorders.)XLCharacterized in males by DD & ID w/variety of behavioral issues. ASD in 50%-70%. Characteristic craniofacial features, hypotonia, gastroesophageal reflux, strabismus, seizures, sleep disorders, joint laxity, pes planus, scoliosis, & recurrent otitis media.
KMT2D
KDM6A
Kabuki syndrome AD
XL
Typical facial features (long palpebral fissures w/eversion of lateral 3rd of lower eyelid; arched, notched, & broad eyebrows; short columella w/depressed nasal tip; large, prominent, or cupped ears), minor skeletal anomalies, infantile hypotonia, persistence of fetal fingertip pads, ID, & postnatal growth deficiency.
NFIX Malan syndrome (OMIM 614753)ADDD/ID; macrocephaly; tall stature; tall/broad forehead; long face; strabismus; nystagmus; hypotonia; anxiety
NSD1 Sotos syndrome ADCardinal features (present in ≥90% of persons w/Sotos syndrome) are distinctive facial appearance (broad & prominent forehead w/dolichocephalic head shape; sparse frontotemporal hair; downslanting palpebral fissures; malar hypoplasia & flushing; long & narrow face; long chin), learning disability, & overgrowth.
SETD2 SETD2 neurodevelopmental disorder ± macrocephaly/
overgrowth (Luscan-Lumish syndrome) (See SETD2 Neurodevelopmental Disorders.)
ADMacrocephaly/overgrowth. Can also include DD/ID, obesity, advanced bone age, & behavioral findings (most typically ASD). This spectrum also includes individuals who have normal growth.

AD = autosomal dominant; ASD = autism spectrum disorder; DD = developmental delay; ID = intellectual disability; MOI = mode of inheritance; XL = X-linked

1.

In contrast to Tatton-Brown-Rahman syndrome, which is caused by loss-of-function pathogenic variants in DNMT3A, Heyn-Sproul-Jackson syndrome is caused by gain-of-function pathogenic variants (see Tatton-Brown-Rahman Syndrome, Genetically Related Disorders).

From: TET3-Related Beck-Fahrner Syndrome

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