Table 4Identified biospecimen molecular diagnostic biomarkers, with QC scope and evaluation

QC toolAnalyte typeSample typeQC scopeApplicability gradeAccessibility gradeDelay
Consequence
Reference
Transferrin receptorProteinSerumPre-centrifugation delay118 h blood pre-centrifugation delay
90% increase
De Jongh et al. (1997)
K+IonSerumPre-centrifugation delay at 4 °C111 day pre-centrifugation delay at 4 °C
200% increase
7 day pre-centrifugation delay at 4 °C
500% increase
Heins et al. (1995)
GM-CSF, IL-1α, G-CSFProteinEDTA plasma ± PIPre-centrifugation delay112 h pre-centrifugation delay at RT
11–20-fold increase without PI
7–10-fold increase with PI
Ayache et al. (2006)
sCD40LProteinSerumExposure to RT1112 h at 37 °C or 48 h at RT
Complete degradation
Lengellé et al. (2008)
Vitamin EVitaminEDTA plasmaStorage conditions11> 24 months at −20 °C
> 90% decrease
Ockè et al. (1995)
MMP-7ProteinSerumFreeze-thawing1130 freeze–thaw cycles
Loss of MMP-7
Chaigneau et al. (2007)
DUSP1 expressionRNAFresh prostatic tissueWarm ischaemia time11Warm ischaemia
14-fold upregulation
Lin et al. (2006)
p-Tyr, ERBB2 (alias HER2; alias Neu)-Tyr1248, PTK2 (alias FAK)ProteinBreast tissueCold ischaemia time1124 h of cold ischaemia
Complete denaturation of phosphorylated epitopes
De Cecco et al. (2009)

±, with or without; EDTA, ethylenediaminetetraacetic acid; G-CSF, granulocyte colony-stimulating factor; GM-CSF, granulocyte-macrophage colony-stimulating factor; IL-1α, interleukin 1 alpha; K+, potassium; MMP-7, matrix metalloproteinase-7; PI, protease inhibitors; QC, quality control; RT, room temperature; Tyr, tyrosine.

Source: Adapted from Betsou et al. (2013), Copyright (2013), with permission from Elsevier.

From: SECTION 3., Recommendations for biobanks

Cover of Common Minimum Technical Standards and Protocols for Biobanks Dedicated to Cancer Research
Common Minimum Technical Standards and Protocols for Biobanks Dedicated to Cancer Research.
IARC Technical Report, No. 44.
Mendy M, Caboux E, Lawlor RT, et al.
© International Agency for Research on Cancer, 2017. For more information contact publications@iarc.fr.

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