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Select item 54779891.

Germline Variants in Targeted Tumor Sequencing Using Matched Normal DNA

Kasmintan A. Schrader, Donavan T. Cheng, Vijai Joseph, Meera Prasad, Michael Walsh, Ahmet Zehir, Ai Ni, Tinu Thomas, Ryma Benayed, Asad Ashraf, Annie Lincoln, Maria Arcila, Zsofia Stadler, David Solit, David M. Hyman, Liying Zhang, David Klimstra, Marc Ladanyi, Kenneth Offit, Michael Berger, Mark Robson

JAMA Oncol. Author manuscript; available in PMC 2017 Jun 20.

Published in final edited form as: JAMA Oncol. 2016 Jan; 2(1): 104–111. doi: 10.1001/jamaoncol.2015.5208

Correction in:: JAMA Oncol. 2016 Feb; 2(2): 279.

PMCID:: PMC5477989

Abstract Article PDF–526K

Select item 48781032.

Building a Personalized Medicine Infrastructure at a Major Cancer Center

Funda Meric-Bernstam, Carol Farhangfar, John Mendelsohn, Gordon B. Mills

J Clin Oncol. 2013 May 20; 31(15): 1849–1857. Published online 2013 Apr 15. doi: 10.1200/JCO.2012.45.3043

PMCID:: PMC4878103

Abstract Article PDF–461K

Select item 48492593.

Germline Findings in Tumor-Only Sequencing: Points to Consider for Clinicians and Laboratories

Victoria M. Raymond, Stacy W. Gray, Sameek Roychowdhury, Steve Joffe, Arul M. Chinnaiyan, D. Williams Parsons, Sharon E. Plon

J Natl Cancer Inst. 2016 Apr; 108(4): djv351. Published online 2015 Nov 20. doi: 10.1093/jnci/djv351

PMCID:: PMC4849259

Abstract Article PDF–611K

Select item 45447534.

Standards and Guidelines for the Interpretation of Sequence Variants: A Joint Consensus Recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology

Sue Richards, Nazneen Aziz, Sherri Bale, David Bick, Soma Das, Julie Gastier-Foster, Wayne W. Grody, Madhuri Hegde, Elaine Lyon, Elaine Spector, Karl Voelkerding, Heidi L. Rehm

Genet Med. Author manuscript; available in PMC 2015 Nov 1.

Published in final edited form as: Genet Med. 2015 May; 17(5): 405–424. Published online 2015 Mar 5. doi: 10.1038/gim.2015.30

PMCID:: PMC4544753

Abstract Article PDF–960K

Select item 43039365.

Tumor genome analysis includes germline genome: Are we ready for surprises?

Daniel VT Catenacci, Andrea L Amico, Sarah M Nielsen, Daniel M Geynisman, Brittany Rambo, George B Carey, Cassandra Gulden, Jim Fackenthal, Robert D Marsh, Hedy L Kindler, Olufunmilayo I Olopade

Int J Cancer. 2015 Apr; 136(7): 1559–1567. Published online 2014 Aug 14. doi: 10.1002/ijc.29128

PMCID:: PMC4303936

Abstract Article PDF–299K

Select item 41881596.

Clinical Tumor Sequencing: An Incidental Casualty of the American College of Medical Genetics and Genomics Recommendations for Reporting of Incidental Findings

D. Williams Parsons, Angshumoy Roy, Sharon E. Plon, Sameek Roychowdhury, Arul M. Chinnaiyan

J Clin Oncol. 2014 Jul 20; 32(21): 2203–2205. Published online 2014 Jun 23. doi: 10.1200/JCO.2013.54.8917

PMCID:: PMC4188159

Article PDF–63K

Select item 40960557.

Traditional Roles in a Non-Traditional Setting: Genetic Counseling in Precision Oncology

Jessica N. Everett, Shanna L. Gustafson, Victoria M. Raymond

J Genet Couns. Author manuscript; available in PMC 2015 Aug 1.

Published in final edited form as: J Genet Couns. 2014 Aug; 23(4): 655–660. Published online 2014 Mar 1. doi: 10.1007/s10897-014-9698-3

PMCID:: PMC4096055

Abstract Article PDF–167K

Select item 39252848.

A systematic review of cancer GWAS and candidate gene meta-analyses reveals limited overlap but similar effect sizes

Christine Q Chang, Ajay Yesupriya, Jessica L Rowell, Camilla B Pimentel, Melinda Clyne, Marta Gwinn, Muin J Khoury, Anja Wulf, Sheri D Schully

Eur J Hum Genet. 2014 Mar; 22(3): 402–408. Published online 2013 Jul 24. doi: 10.1038/ejhg.2013.161

PMCID:: PMC3925284

Abstract Article PDF–1.1M

Select item 38082349.

Existing and Emerging Technologies for Tumor Genomic Profiling

Laura E. MacConaill

J Clin Oncol. 2013 May 20; 31(15): 1815–1824. Published online 2013 Apr 15. doi: 10.1200/JCO.2012.46.5948

PMCID:: PMC3808234

Abstract Article PDF–714K

Select item 372727410.

ACMG Recommendations for Reporting of Incidental Findings in Clinical Exome and Genome Sequencing

Robert C. Green, Jonathan S. Berg, Wayne W. Grody, Sarah S. Kalia, Bruce R. Korf, Christa L. Martin, Amy McGuire, Robert L. Nussbaum, Julianne M. O’Daniel, Kelly E. Ormond, Heidi L. Rehm, Michael S. Watson, Marc S. Williams, Leslie G. Biesecker

Genet Med. Author manuscript; available in PMC 2014 Jan 1.

Published in final edited form as: Genet Med. 2013 Jul; 15(7): 565–574. Published online 2013 Jun 20. doi: 10.1038/gim.2013.73

PMCID:: PMC3727274

Abstract Article PDF–65K

Select item 339769711.

Potential Usefulness of Single Nucleotide Polymorphisms to Identify Persons at High Cancer Risk: An Evaluation of Seven Common Cancers

Ju-Hyun Park, Mitchell H. Gail, Mark H. Greene, Nilanjan Chatterjee

J Clin Oncol. 2012 Jun 10; 30(17): 2157–2162. Published online 2012 May 14. doi: 10.1200/JCO.2011.40.1943

PMCID:: PMC3397697

Abstract Article PDF–86K

Select item 331896312.

Common genetic variants in prostate cancer risk prediction – Results from the NCI Breast and Prostate Cancer Cohort Consortium (BPC3)

Sara Lindström, Fredrick R. Schumacher, David Cox, Ruth C. Travis, Demetrius Albanes, Naomi E. Allen, Gerald Andriole, Sonja I. Berndt, Heiner Boeing, H. Bas Bueno-de-Mesquita, E. David Crawford, W. Ryan Diver, J. Michael Ganziano, Graham G. Giles, Edward Giovannucci, Carlos A. Gonzalez, Brian Henderson, David J. Hunter, Mattias Johansson, Laurence N. Kolonel, Jing Ma, Loic Le Marchand, Valeria Pala, Meir Stampfer, Daniel O. Stram, Michael J. Thun, Anne Tjonneland, Dimitrios Trichopoulos, Jarmo Virtamo, Stephanie J. Weinstein, Walter C. Willett, Meredith Yeager, Richard B. Hayes, Gianluca Severi, Christopher A. Haiman, Stephen J. Chanock, Peter Kraft

Cancer Epidemiol Biomarkers Prev. Author manuscript; available in PMC 2013 Mar 1.

Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2012 Mar; 21(3): 437–444. Published online 2012 Jan 11. doi: 10.1158/1055-9965.EPI-11-1038

PMCID:: PMC3318963

Abstract Article PDF–286K

Select item 311736113.

Bioinformatics challenges for personalized medicine

Guy Haskin Fernald, Emidio Capriotti, Roxana Daneshjou, Konrad J. Karczewski, Russ B. Altman

Bioinformatics. 2011 Jul 1; 27(13): 1741–1748. Published online 2011 May 19. doi: 10.1093/bioinformatics/btr295

Correction in:: Bioinformatics. 2011 Aug 15; 27(16): 2323.

PMCID:: PMC3117361

Abstract Article

Select item 307591814.

Sequence variant classification and reporting: recommendations for improving the interpretation of cancer susceptibility genetic test results

Sharon E. Plon, Diana M. Eccles, Douglas Easton, William D. Foulkes, Maurizio Genuardi, Marc S. Greenblatt, Frans B.L. Hogervorst, Nicoline Hoogerbrugge, Amanda B. Spurdle, Sean Tavtigian

Hum Mutat. Author manuscript; available in PMC 2011 Apr 13.

Published in final edited form as: Hum Mutat. 2008 Nov; 29(11): 1282–1291. doi: 10.1002/humu.20880

PMCID:: PMC3075918

Abstract Article PDF–409K

Select item 301662615.

The $1,000 genome, the $100,000 analysis?

Elaine R Mardis

Genome Med. 2010; 2(11): 84. Published online 2010 Nov 26. doi: 10.1186/gm205

PMCID:: PMC3016626

Article PDF–220K

Select item 292118116.

Performance of Common Genetic Variants in Breast-Cancer Risk Models

Sholom Wacholder, Patricia Hartge, Ross Prentice, Montserrat Garcia-Closas, Heather Spencer Feigelson, W. Ryan Diver, Michael J. Thun, David G. Cox, Susan E. Hankinson, Peter Kraft, Bernard Rosner, Christine D. Berg, Louise A. Brinton, Jolanta Lissowska, Mark E. Sherman, Rowan Chlebowski, Charles Kooperberg, Rebecca D. Jackson, Dennis W. Buckman, Peter Hui, Ruth Pfeiffer, Kevin B. Jacobs, Gilles D. Thomas, Robert N. Hoover, Mitchell H. Gail, Stephen J. Chanock, David J. Hunter

N Engl J Med. Author manuscript; available in PMC 2010 Sep 1.

Published in final edited form as: N Engl J Med. 2010 Mar 18; 362(11): 986–993. doi: 10.1056/NEJMoa0907727